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Series GSE5047 Query DataSets for GSE5047
Status Public on Nov 03, 2006
Title Genomic comparison of vancomycin susceptible and vancomycin intermediate Staphylococcus aureus pairs
Organism Staphylococcus aureus
Experiment type Genome variation profiling by array
Summary To determine if significant genomic changes are associated with the development of vancomycin intermediate Staphylococcus aureus, genomic DNA microarrays were performed to compare the initial vancomycin susceptible Staphylococcus aureus (VSSA) and a related vancomycin intermediate Staphylococcus aureus (VISA) isolate from five unique patients (five isolate pairs).
Keywords: comparative genomic hybridization
 
Overall design A single 2-channel array was performed for each isolate pair using genomic DNA. Raw data was compiled using IMAGENE. Normalisation and statistical analysis was undertaken using BASE. Statistics were performed using the Wilcoxon signed ranked test.
 
Contributor(s) Howden BP, Johnson PD, Ward PB, Stinear TP, Davies JK
Citation(s) 16940100
Submission date Jun 11, 2006
Last update date Mar 16, 2012
Contact name Benjamin Peter Howden
E-mail(s) benjamin.howden@austin.org.au
Phone +61 3 9496 6676
Organization name Austin Health
Department Infectious Diseases
Street address Studley Rd
City Heidelberg
State/province Victoria
ZIP/Postal code 3084
Country Australia
 
Platforms (1)
GPL3866 TIGR Staphylococcus aureus version2 array
Samples (5)
GSM113849 JKD6000 and JKD6001 genomic comparison
GSM113850 JKD6004 and JKD6005 genomic comparison
GSM113851 JKD6008 and JKD6009 genomic comparison
Relations
BioProject PRJNA96683

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE5047_RAW.tar 9.4 Mb (http)(custom) TAR (of TXT)

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