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Series GSE50860 Query DataSets for GSE50860
Status Public on Sep 19, 2013
Title Re-analysis of E-MTAB-1585
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Third-party reanalysis
Summary Raw data from E-MTAB-1585 was normalized by using reads per million.
https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1585/
 
Overall design Strand specific RNA-Seq data E-MTAB-1585 was normalized and subtracted control from knockdown to generate tracks that more clearly displayed the unusual pattern of RNA expression caused by knockdown of 7SK.
The following wig files were generated from multiple samples (i.e.raw data files), as indicated in the 'readme.txt' file.
7sk_3p_KD_norm.wig: 7SK 3P Knockdown normalized
7sk_3p_KDF_norm.wig: 7SK 3P Knockdown normalized (Forward)
7sk_3p_KDR_norm.wig: 7SK 3P Knockdown normalized (Reverse)
7sk_5p_KD_norm.wig: 7SK 5P Knockdown normalized
7sk_5p_KDF_norm.wig: 7SK 5P Knockdown normalized (Forward)
7sk_5p_KDR_norm.wig: 7SK 5P Knockdown normalized (Reverse)
7sk_Control_norm.wig: 7SK Control normalized
7sk_ControlF_norm.wig: 7SK Control normalized (Forward)
7sk_ControlR_norm.wig: 7SK Control normalized (Reverse)
7sk_3p_KDF-ControlF.wig: 7SK 3P Knockdown-Control (Forward)
7sk_3p_KDR-ControlR.wig: 7SK 3P Knockdown-Control (Reverse)
7sk_5p_KDF-ControlF.wig: 7SK 5P Knockdown-Control (Forward)
7sk_5p_KDR-ControlR.wig: 7SK 5P Knockdown-Control (Reverse)
 
Contributor(s) Li T, Price DH
Citation(s) 24079702
Submission date Sep 13, 2013
Last update date May 15, 2019
Contact name Tiandao Li
Organization name Washington University
Street address 4444 Forest Park Ave
City St Louis
State/province MO
ZIP/Postal code 63108
Country USA
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (14)
GSM1234855 [E-MTAB-1585] 7sk_1a [re-analysis]
GSM1234856 [E-MTAB-1585] 7sk_1b [re-analysis]
GSM1234857 [E-MTAB-1585] 7sk_1c [re-analysis]
Relations
SRA ERP002405
ArrayExpress E-MTAB-1585
BioProject PRJNA219630

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE50860_7sk_3p_KDF-ControlF.wig.gz 64.8 Mb (ftp)(http) WIG
GSE50860_7sk_3p_KDF_norm.wig.gz 79.0 Mb (ftp)(http) WIG
GSE50860_7sk_3p_KDR-ControlR.wig.gz 63.5 Mb (ftp)(http) WIG
GSE50860_7sk_3p_KDR_norm.wig.gz 78.7 Mb (ftp)(http) WIG
GSE50860_7sk_3p_KD_norm.wig.gz 77.5 Mb (ftp)(http) WIG
GSE50860_7sk_5p_KDF-ControlF.wig.gz 57.8 Mb (ftp)(http) WIG
GSE50860_7sk_5p_KDF_norm.wig.gz 68.3 Mb (ftp)(http) WIG
GSE50860_7sk_5p_KDR-ControlR.wig.gz 53.7 Mb (ftp)(http) WIG
GSE50860_7sk_5p_KDR_norm.wig.gz 67.8 Mb (ftp)(http) WIG
GSE50860_7sk_5p_KD_norm.wig.gz 66.6 Mb (ftp)(http) WIG
GSE50860_7sk_ControlF_norm.wig.gz 51.3 Mb (ftp)(http) WIG
GSE50860_7sk_ControlR_norm.wig.gz 50.9 Mb (ftp)(http) WIG
GSE50860_7sk_Control_norm.wig.gz 50.9 Mb (ftp)(http) WIG
GSE50860_readme.txt 1.6 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Processed data are available on Series record
Raw data not provided for this record
Raw data are available in SRA

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