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Series GSE51091 Query DataSets for GSE51091
Status Public on Mar 17, 2014
Title Transcriptional comparison of the filamentous fungus Neurospora crassa growing on three major monosaccharides D-glucose, D-xylose and L-arabinose
Organism Neurospora crassa
Experiment type Expression profiling by high throughput sequencing
Summary D-glucose, D-xylose and L-arabinose are three major monosaccharides in the plant cell wall. Complete utilization of all three sugars is still a bottleneck for second-generation cellulolytic bioethanol production, especially for L-arabinose. However, little is known about the gene expression profiles during L-arabinose utilization in fungi at genome-wide level and a comparison of the genome-wide fungal response to these three major monosaccharides has not yet been reported. To better understand the microbial response and utilization of L-arabinose for subsequent microbial engineering for co-fermentation all three sugars, we performed transcriptome analysis of N. crassa grown on L-arabinose, compared with that on D-xylose and D-glucose.
Overall design RNA was extracted from cultures of N. carassa in early growth stage growing with D-glucose, L-arabinose or D-xylose as carbon source; duplicate cultures were sampled in some conditions.
Contributor(s) Li J, Tian C
Citation(s) 24581151
Submission date Sep 23, 2013
Last update date May 15, 2019
Contact name Jingen Li
Phone +86-02284861948
Organization name Tianjin institute of industrial biotechnology,Chinses Academy of Sciences
Street address Xiqi Dao 32, Tianjin Airport Economic Area
City Tianjin
ZIP/Postal code 300308
Country China
Platforms (1)
GPL16164 Illumina HiSeq 2000 (Neurospora crassa)
Samples (5)
GSM1238597 Ncrassa_arabinose_rep1
GSM1238602 Ncrassa_arabinose_rep2
GSM1238604 Ncrassa_glucose_rep1
BioProject PRJNA221152
SRA SRP030206

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Supplementary file Size Download File type/resource
GSE51091_RAW.tar 210.0 Kb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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