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Series GSE51896 Query DataSets for GSE51896
Status Public on Aug 31, 2014
Title Gene expression analysis of 35S::JMJ30-HA overexpression transgenic lines grown at 22°C under long day conditions
Organism Arabidopsis thaliana
Experiment type Expression profiling by array
Summary Analysis of overexpression of JMJ30 in Arabidopsis thaliana (Col). JMJ30 encode the histone demethylases that contain the catalytic JmjC domain.
The trimethylation of Histone H3 lysine 27 (H3K27me3) plays a key role in gene repression and developmental regulation. It is actively and dynamically deposited and removed in plants. However, while the H3K27 methyltransferases had been extensively studied, findings on the H3K27 demethylase were few. Here, we show that JMJ30 encodes a H3K27me3 demethylase, and genes up-regulated in 35S::JMJ30-HA transgenic lines are enriched for H3K27me3 targets.
Overall design Columbia wild-type (Col WT) and 35S::JMJ30-HA transgenic plants were grown at 22°C under long day conditions, and seedling samples were collected at 13 day-after-germination (DAG). Two independent sets of WT and 35S::JMJ30-HA seedling mRNA samples were used for this array.
Contributor(s) Gan E, Ito T
Citation(s) 25267112
Submission date Oct 30, 2013
Last update date Oct 21, 2016
Contact name Toshiro Ito
Organization name Temasek Life Sciences Laboratory
Lab Plant Systems Biology
Street address 1 Research Link, National University of Singapore
City Singapore
ZIP/Postal code 117604
Country Singapore
Platforms (1)
GPL13970 NimbleGen Arabidopsis thaliana Gene Expression 12x135K Array [100718_Athal_TAIR9_exp; SEQ_ID]
Samples (4)
GSM1254788 Col WT, rep1
GSM1254789 Col WT, rep2
GSM1254790 35S-JMJ30-HA, rep1
This SubSeries is part of SuperSeries:
GSE51898 Gene expression analysis of overexpression and loss-of-function at JUMONJI30
BioProject PRJNA225782

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE51896_RAW.tar 17.7 Mb (http)(custom) TAR (of PAIR)
Processed data included within Sample table

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