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Series GSE55052 Query DataSets for GSE55052
Status Public on Nov 13, 2015
Title Study of the impact of G9a on DNA methylation in mouse embryonic cells [array]
Organism Mus musculus
Experiment type Methylation profiling by genome tiling array
Summary We explored the role of the lysine-methyltrasferase G9a in the control of DNA methylation during mouse embryogenesis. We provide maps of cytosine methylation by MeDIP and RRBS in G9a-deficient mouse embryos and ES cells, as well as ChIP-Seq profiles for H3K9me2 in embryos and RNA-Seq expression profiles in G9a-deficient embryos.
 
Overall design We mapped DNA methylation by MeDIP in WT and G9aKO E9.5 embryos. Experiments were performed in triplicates, and MeDIP and Input samples were hybridized to Nimblegen HD2 mm9 promoter deluxe arrays covering 12 kb of all gene promoters.
 
Contributor(s) Weber M, Guibert S
Citation(s) 26576615
Submission date Feb 14, 2014
Last update date Feb 12, 2016
Contact name Michael Weber
Organization name CNRS
Department UMR7242 Biotechnology and Cell Signalling
Street address 300 Bd Sebastien Brant
City Illkirch
ZIP/Postal code 67412
Country France
 
Platforms (1)
GPL17878 NimbleGen Mouse MM9 Deluxe Promoter Array (100718_MM9_Promoter_MeDIP_HX1)
Samples (6)
GSM1328838 MeDIP_E9.5 WT-Rep1
GSM1328839 MeDIP_E9.5 WT-Rep2
GSM1328840 MeDIP_E9.5 WT-Rep3
This SubSeries is part of SuperSeries:
GSE71500 Study of the impact of G9a on DNA methylation in mouse embryonic cells
Relations
BioProject PRJNA238337

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE55052_RAW.tar 613.8 Mb (http)(custom) TAR (of PAIR)
GSE55052_normalized.txt.gz 35.3 Mb (ftp)(http) TXT
Processed data are available on Series record

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