|
| Status |
Public on Sep 01, 2015 |
| Title |
Epigenome signatures during gastric carcinogenesis based on next generation sequencing analysis [Bisulfite-Seq] |
| Organism |
Homo sapiens |
| Experiment type |
Methylation profiling by high throughput sequencing
|
| Summary |
Because gastric cancer cells already had genetic and epigenetic alterations which can affect the gastric carcinogenesis, we tried to characterize genetic and epigenetic changes during gastric carcinogenesis. To do this, we performed MBD sequencing and RRBS sequencing.
|
| |
|
| Overall design |
MBD and RRBS sequencing of gastric mucosa, intestinal metaplasia, and gastric cancer cells from one patient were generated by NGS using Illumina GAII.
|
| |
|
| Contributor(s) |
Kim YS, Kim H, Baek S |
| Citation(s) |
30510283, 26462176 |
| |
| Submission date |
Feb 19, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Hee-jin Kim |
| E-mail(s) |
heejin@kribb.re.kr
|
| Organization name |
KRIBB
|
| Street address |
125 Gwahak-ro, Yuseong-gu
|
| City |
Daejeon |
| ZIP/Postal code |
363-883 |
| Country |
South Korea |
| |
|
| Platforms (1) |
| GPL9115 |
Illumina Genome Analyzer II (Homo sapiens) |
|
| Samples (3) |
|
| This SubSeries is part of SuperSeries: |
| GSE55160 |
Epigenome signatures during gastric carcinogenesis based on next generation sequencing |
|
| Relations |
| BioProject |
PRJNA238873 |
| SRA |
SRP038654 |
