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Series GSE55266 Query DataSets for GSE55266
Status Public on Nov 07, 2014
Title A composite map of copy number variable (CNV) regions in the horse genome and the discovery of CNVs involved in equine XY disorders of sexual development
Organism Equus caballus
Experiment type Genome variation profiling by array
Summary 38 horses from 16 diverse breeds and Przewalski's Horse were used to generate a composite CNV map of equine genome. This map was used to detect novel copy number variation in six horses affected with disorder of sexual development (DSD).
 
Overall design 38 horses from 16 diverse breeds and Przewalski's Horse, at least one male and one female were taken from each breed, six DSD 'Sex-reversal' samples. Male and DSD samples were hybridized with Thoroughbred1, and female samples were hybridized with Thoroughbred2
 
Contributor(s) Ghosh S, Qu Z, Fang E, Das PJ, Caldwell J, Juras R, Cothran EG, MacDonell S, Kenney DG, Lear T, Adelson D, Chowdhary BP, Raudsepp T
Citation(s) 25340504
Submission date Feb 21, 2014
Last update date Nov 08, 2014
Contact name Sharmila Ghosh
E-mail(s) sghosh@cvm.tamu.edu
Phone 9794584275
Organization name Texas A&M University
Department VIBS
Street address VMS Building, Rm 107, 4458 TAMUS
City College Station
State/province TX
ZIP/Postal code 77843
Country USA
 
Platforms (1)
GPL18315 Agilent-030025 Texas-Adelaide Array
Samples (44)
GSM1332940 Akhal-Teke male 1
GSM1332941 Akhal-Teke male 2
GSM1332942 American Miniature Horse male 1
Relations
BioProject PRJNA239016

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE55266_RAW.tar 1.9 Gb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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