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Series GSE55381 Query DataSets for GSE55381
Status Public on Feb 27, 2014
Title Whole transcription data for mouse spermatogonial cells
Organism Mus musculus
Experiment type Expression profiling by genome tiling array
Summary Spermatogenesis is a multi-step yet tightly regulated developmental process to produce male gemetes for reproduction. In mouse spermatogenesis, a sub-group of type A spermatogonia (Spga) known as spermatogonial stem cells (SSCs) maintain their population by self-renewal, and differentiate through mitosis and meiosis to form tetraploid (4n) pacchytene spermatocytes (Spcy) and haploid (n) round spermatids (Sptd), which further differentiate into functional sperms. In this study, we selected three representative stages of mouse spermatogenesis, namely Spga, Spcy and Sptd, to study their transcriptomic charteristics using whole genome tiling microarray.
 
Overall design Three biological replicates of each selected stage. Spga were isolated from 6-day-old Balb/c mice, Spcy and Sptd from 60-day-old Balb/c mice. Transcriptomic landscapes of these three cell types were analysed with whole genome tiling array.
 
Contributor(s) Lee T, Rennert OM, Chan W
Citation(s) 22144238
Tin-Lap Lee, Owen M. Rennert, Wai-Yee Chan. Revealing the transcriptome landscape of mouse spermatogonial cells by tiling microarray. Methods Mol Biol. 2012;825:75-92.
Submission date Feb 26, 2014
Last update date Feb 27, 2014
Contact name Tin-Lap Lee
Phone +852 39434436
Organization name The Chinese University of Hong Kong
Department School of Biomedical Sciences
Street address Area 39
City Shatin
ZIP/Postal code 00000
Country Hong Kong
 
Platforms (14)
GPL13194 [Mm35b_M01R_v01] Affymetrix Mouse Tiling 1.1R Array Set
GPL13195 [Mm35b_M02R_v01] Affymetrix Mouse Tiling 1.1R Array Set
GPL13196 [Mm35b_M03R_v01] Affymetrix Mouse Tiling 1.1R Array Set
Samples (126)
GSM1335096 Mouse type A spermatogonia, biological rep 1, chip A
GSM1335097 Mouse type A spermatogonia, biological rep 1, chip B
GSM1335098 Mouse type A spermatogonia, biological rep 1, chip C
Relations
BioProject PRJNA239451

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE55381_RAW.tar 3.0 Gb (http)(custom) TAR (of CEL)
GSE55381_Spcy_A.bar.gz 138.2 Kb (ftp)(http) BAR
GSE55381_Spcy_B.bar.gz 934.5 Kb (ftp)(http) BAR
GSE55381_Spcy_C.bar.gz 373.7 Kb (ftp)(http) BAR
GSE55381_Spcy_D.bar.gz 435.8 Kb (ftp)(http) BAR
GSE55381_Spcy_E.bar.gz 2.4 Mb (ftp)(http) BAR
GSE55381_Spcy_F.bar.gz 80.0 Kb (ftp)(http) BAR
GSE55381_Spcy_G.bar.gz 176.0 Kb (ftp)(http) BAR
GSE55381_Spcy_H.bar.gz 71.5 Kb (ftp)(http) BAR
GSE55381_Spcy_I.bar.gz 860.9 Kb (ftp)(http) BAR
GSE55381_Spcy_J.bar.gz 377.4 Kb (ftp)(http) BAR
GSE55381_Spcy_K.bar.gz 429.2 Kb (ftp)(http) BAR
GSE55381_Spcy_L.bar.gz 262.1 Kb (ftp)(http) BAR
GSE55381_Spcy_M.bar.gz 948.0 Kb (ftp)(http) BAR
GSE55381_Spcy_N.bar.gz 439.6 Kb (ftp)(http) BAR
GSE55381_Spga_A.bar.gz 2.2 Mb (ftp)(http) BAR
GSE55381_Spga_B.bar.gz 101.4 Kb (ftp)(http) BAR
GSE55381_Spga_C.bar.gz 371.3 Kb (ftp)(http) BAR
GSE55381_Spga_D.bar.gz 210.4 Kb (ftp)(http) BAR
GSE55381_Spga_E.bar.gz 180.7 Kb (ftp)(http) BAR
GSE55381_Spga_F.bar.gz 1.0 Mb (ftp)(http) BAR
GSE55381_Spga_G.bar.gz 304.2 Kb (ftp)(http) BAR
GSE55381_Spga_H.bar.gz 190.6 Kb (ftp)(http) BAR
GSE55381_Spga_I.bar.gz 416.9 Kb (ftp)(http) BAR
GSE55381_Spga_J.bar.gz 509.2 Kb (ftp)(http) BAR
GSE55381_Spga_K.bar.gz 227.1 Kb (ftp)(http) BAR
GSE55381_Spga_L.bar.gz 211.7 Kb (ftp)(http) BAR
GSE55381_Spga_M.bar.gz 72.3 Kb (ftp)(http) BAR
GSE55381_Spga_N.bar.gz 12.3 Mb (ftp)(http) BAR
GSE55381_Sptd_A.bar.gz 377.3 Kb (ftp)(http) BAR
GSE55381_Sptd_B.bar.gz 597.6 Kb (ftp)(http) BAR
GSE55381_Sptd_C.bar.gz 276.3 Kb (ftp)(http) BAR
GSE55381_Sptd_D.bar.gz 500.2 Kb (ftp)(http) BAR
GSE55381_Sptd_E.bar.gz 371.5 Kb (ftp)(http) BAR
GSE55381_Sptd_F.bar.gz 253.8 Kb (ftp)(http) BAR
GSE55381_Sptd_G.bar.gz 367.5 Kb (ftp)(http) BAR
GSE55381_Sptd_H.bar.gz 249.5 Kb (ftp)(http) BAR
GSE55381_Sptd_I.bar.gz 801.3 Kb (ftp)(http) BAR
GSE55381_Sptd_J.bar.gz 407.3 Kb (ftp)(http) BAR
GSE55381_Sptd_K.bar.gz 237.8 Kb (ftp)(http) BAR
GSE55381_Sptd_L.bar.gz 621.5 Kb (ftp)(http) BAR
GSE55381_Sptd_M.bar.gz 387.5 Kb (ftp)(http) BAR
GSE55381_Sptd_N.bar.gz 12.5 Mb (ftp)(http) BAR
Processed data are available on Series record
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