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Series GSE55381 Query DataSets for GSE55381
Status Public on Feb 27, 2014
Title Whole transcription data for mouse spermatogonial cells
Organism Mus musculus
Experiment type Expression profiling by genome tiling array
Summary Spermatogenesis is a multi-step yet tightly regulated developmental process to produce male gemetes for reproduction. In mouse spermatogenesis, a sub-group of type A spermatogonia (Spga) known as spermatogonial stem cells (SSCs) maintain their population by self-renewal, and differentiate through mitosis and meiosis to form tetraploid (4n) pacchytene spermatocytes (Spcy) and haploid (n) round spermatids (Sptd), which further differentiate into functional sperms. In this study, we selected three representative stages of mouse spermatogenesis, namely Spga, Spcy and Sptd, to study their transcriptomic charteristics using whole genome tiling microarray.
Overall design Three biological replicates of each selected stage. Spga were isolated from 6-day-old Balb/c mice, Spcy and Sptd from 60-day-old Balb/c mice. Transcriptomic landscapes of these three cell types were analysed with whole genome tiling array.
Contributor(s) Lee T, Rennert OM, Chan W
Citation(s) 22144238
Tin-Lap Lee, Owen M. Rennert, Wai-Yee Chan. Revealing the transcriptome landscape of mouse spermatogonial cells by tiling microarray. Methods Mol Biol. 2012;825:75-92.
Submission date Feb 26, 2014
Last update date Feb 27, 2014
Contact name Tin-Lap Lee
Phone +852 39434436
Organization name The Chinese University of Hong Kong
Department School of Biomedical Sciences
Street address Area 39
City Shatin
ZIP/Postal code 00000
Country Hong Kong
Platforms (14)
GPL13194 [Mm35b_M01R_v01] Affymetrix Mouse Tiling 1.1R Array Set
GPL13195 [Mm35b_M02R_v01] Affymetrix Mouse Tiling 1.1R Array Set
GPL13196 [Mm35b_M03R_v01] Affymetrix Mouse Tiling 1.1R Array Set
Samples (126)
GSM1335096 Mouse type A spermatogonia, biological rep 1, chip A
GSM1335097 Mouse type A spermatogonia, biological rep 1, chip B
GSM1335098 Mouse type A spermatogonia, biological rep 1, chip C
BioProject PRJNA239451

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE55381_RAW.tar 3.0 Gb (http)(custom) TAR (of CEL) 138.2 Kb (ftp)(http) BAR 934.5 Kb (ftp)(http) BAR 373.7 Kb (ftp)(http) BAR 435.8 Kb (ftp)(http) BAR 2.4 Mb (ftp)(http) BAR 80.0 Kb (ftp)(http) BAR 176.0 Kb (ftp)(http) BAR 71.5 Kb (ftp)(http) BAR 860.9 Kb (ftp)(http) BAR 377.4 Kb (ftp)(http) BAR 429.2 Kb (ftp)(http) BAR 262.1 Kb (ftp)(http) BAR 948.0 Kb (ftp)(http) BAR 439.6 Kb (ftp)(http) BAR 2.2 Mb (ftp)(http) BAR 101.4 Kb (ftp)(http) BAR 371.3 Kb (ftp)(http) BAR 210.4 Kb (ftp)(http) BAR 180.7 Kb (ftp)(http) BAR 1.0 Mb (ftp)(http) BAR 304.2 Kb (ftp)(http) BAR 190.6 Kb (ftp)(http) BAR 416.9 Kb (ftp)(http) BAR 509.2 Kb (ftp)(http) BAR 227.1 Kb (ftp)(http) BAR 211.7 Kb (ftp)(http) BAR 72.3 Kb (ftp)(http) BAR 12.3 Mb (ftp)(http) BAR 377.3 Kb (ftp)(http) BAR 597.6 Kb (ftp)(http) BAR 276.3 Kb (ftp)(http) BAR 500.2 Kb (ftp)(http) BAR 371.5 Kb (ftp)(http) BAR 253.8 Kb (ftp)(http) BAR 367.5 Kb (ftp)(http) BAR 249.5 Kb (ftp)(http) BAR 801.3 Kb (ftp)(http) BAR 407.3 Kb (ftp)(http) BAR 237.8 Kb (ftp)(http) BAR 621.5 Kb (ftp)(http) BAR 387.5 Kb (ftp)(http) BAR 12.5 Mb (ftp)(http) BAR
Processed data are available on Series record

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