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Series GSE55473 Query DataSets for GSE55473
Status Public on Jun 03, 2014
Title High-throughput SuperSAGE for transcript profiling in berry tissues of Vitis vinifera L. under different light regimes
Organism Vitis vinifera
Experiment type Expression profiling by high throughput sequencing
Summary SuperSAGE is a method of digital gene expression profiling that allows isolation of 26bp tag fragments from expressed transcripts. Because its tag size is larger than that of conventional SAGE, SuperSAGE allowed a secure tag-to-gene annotation using BLAST search against grape genome databases.Transcript profiles in nine samples of grape berry tissues under different light conditions were obtained by SuperSAGE analysis and used for screening the genes which have co-ordinated transcript profiles with the change in the flavonoid composition in the samples analyzed. Candidate genes related to flavonoid biosynthesis and regulation were identified.
Overall design Nine different grape samples, i.e., flowers, grape berries of Cabernet Sauvignon at 2, 7, 9 weeks after flowering (WAF), berry skins at 17 days after flowering (DAF) shaded after flowering, and berry skins at 17DAF shaded from flowering to 14DAF and then light exposed, were analyzed.
Contributor(s) Koyama K, Matsumura H
Citation(s) 24860184
Submission date Feb 28, 2014
Last update date May 15, 2019
Contact name Kazuya Koyama
Phone +81-82-420-0812
Organization name National Research Institute of Brewing
Department Fundamental Reesearch Division
Street address 3-7-1, Kagamiyama
City Higashi-Hiroshima
State/province Hiroshima
ZIP/Postal code 739-0046
Country Japan
Platforms (1)
GPL14639 Illumina Genome Analyzer II (Vitis vinifera)
Samples (9)
GSM1337530 Flower
GSM1337531 Skin 2WAF (light exposure)
GSM1337532 Skin 2WAF (shade)
This SubSeries is part of SuperSeries:
GSE55474 Functional characterization of a new grapevine MYB transcription factor and regulation of proanthocyanidin biosynthesis in grapes
BioProject PRJNA239708
SRA SRP039083

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Supplementary file Size Download File type/resource
GSE55473_RAW.tar 900.0 Kb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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