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GEO accession:
Series GSE56093
Query DataSets for GSE56093
Status
Public on Mar 30, 2014
Title
Characterization of transcriptome dynamics in response to contact with host cells
Organisms
Candida albicans
;
Homo sapiens
;
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
25858952
Submission date
Mar 21, 2014
Last update date
May 15, 2019
Contact name
Amol Carl Shetty
E-mail(s)
ashetty@som.umaryland.edu
Organization name
University of Maryland Baltimore
Department
Institute for Genome Sciences
Street address
670 W. Baltimore Street, Floor 3
City
Baltimore
State/province
Maryland
ZIP/Postal code
21201
Country
USA
Platforms (5)
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GPL11154
Illumina HiSeq 2000 (Homo sapiens)
GPL13112
Illumina HiSeq 2000 (Mus musculus)
GPL15645
Illumina HiSeq 2000 (Candida albicans)
GPL18448
Illumina HiSeq 2000 (Candida albicans; Homo sapiens)
GPL18449
Illumina HiSeq 2000 (Candida albicans; Mus musculus)
Samples (88)
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GSM1354888
90m-HUVEC.control-Candida.SC5314.rep1
GSM1354889
90m-HUVEC.infected-Candida.SC5314.rep1
GSM1354890
90m-OKF6.control-Candida.SC5314.rep1
GSM1354891
90m-OKF6.infected-Candida.SC5314.rep1
GSM1354892
5h-HUVEC.control-Candida.SC5314.rep1
GSM1354893
5h-HUVEC.infected-Candida.SC5314.rep1
GSM1354894
5h-HUVEC.uninfected.sc.rep1
GSM1354895
5h-OKF6.control-Candida.SC5314.rep1
GSM1354896
5h-OKF6.infected-Candida.SC5314.rep1
GSM1354897
5h-OKF6.uninfected.sc.rep1
GSM1354898
8h-HUVEC.control-Candida.SC5314.rep1
GSM1354899
8h-HUVEC.infected-Candida.SC5314.rep1
GSM1354900
8h-OKF6.control-Candida.SC5314.rep1
GSM1354901
8h-OKF6.infected-Candida.SC5314.rep1
GSM1354902
90m-HUVEC.control-Candida.WO1.rep1
GSM1354903
90m-HUVEC.infected-Candida.WO1.rep1
GSM1354904
5h-HUVEC.control-Candida.WO1.rep1
GSM1354905
5h-HUVEC.infected-Candida.WO1.rep1
GSM1354906
5h-HUVEC.uninfected.wo.rep1
GSM1354907
8h-HUVEC.control-Candida.WO1.rep1
GSM1354908
8h-HUVEC.infected-Candida.WO1.rep1
GSM1354909
90m-OKF6.control-Candida.WO1.rep1
GSM1354910
90m-OKF6.infected-Candida.WO1.rep1
GSM1354911
5h-OKF6.control-Candida.WO1.rep1
GSM1354912
5h-OKF6.infected-Candida.WO1.rep1
GSM1354913
5h-OKF6.uninfected.wo.rep1
GSM1354914
8h-OKF6.control-Candida.WO1.rep1
GSM1354915
8h-OKF6.infected-Candida.WO1.rep1
GSM1354916
90m-HUVEC.control-Candida.SC5314.rep2
GSM1354917
90m-HUVEC.infected-Candida.SC5314.rep2
GSM1354918
5h-HUVEC.control-Candida.SC5314.rep2
GSM1354919
5h-HUVEC.infected-Candida.SC5314.rep2
GSM1354920
5h-HUVEC.uninfected.sc.rep2
GSM1354921
8h-HUVEC.control-Candida.SC5314.rep2
GSM1354922
8h-HUVEC.infected-Candida.SC5314.rep2
GSM1354923
90m-OKF6.control-Candida.SC5314.rep2
GSM1354924
90m-OKF6.infected-Candida.SC5314.rep2
GSM1354925
5h-OKF6.control-Candida.SC5314.rep2
GSM1354926
5h-OKF6.infected-Candida.SC5314.rep2
GSM1354927
5h-OKF6.uninfected.sc.rep2
GSM1354928
8h-OKF6.control-Candida.SC5314.rep2
GSM1354929
8h-OKF6.infected-Candida.SC5314.rep2
GSM1354930
90m-HUVEC.control-Candida.WO1.rep2
GSM1354931
90m-HUVEC.infected-Candida.WO1.rep2
GSM1354932
5h-HUVEC.control-Candida.WO1.rep2
GSM1354933
5h-HUVEC.infected-Candida.WO1.rep2
GSM1354934
5h-HUVEC.uninfected.wo.rep2
GSM1354935
8h-HUVEC.control-Candida.WO1.rep2
GSM1354936
8h-HUVEC.infected-Candida.WO1.rep2
GSM1354937
90m-OKF6.control-Candida.WO1.rep2
GSM1354938
90m-OKF6.infected-Candida.WO1.rep2
GSM1354939
5h-OKF6.control-Candida.WO1.rep2
GSM1354940
5h-OKF6.infected-Candida.WO1.rep2
GSM1354941
5h-OKF6.uninfected.wo.rep2
GSM1354942
8h-OKF6.control-Candida.WO1.rep2
GSM1354943
8h-OKF6.infected-Candida.WO1.rep2
GSM1354944
uninfected_kidney.rep1
GSM1354945
uninfected_kidney.rep2
GSM1354946
kidney_infected_Candida_6h.rep1
GSM1354947
kidney_infected_Candida_6h.rep2
GSM1354948
kidney_infected_Candida_12h.rep1
GSM1354949
kidney_infected_Candida_12h.rep2
GSM1354950
kidney_infected_Candida_24h.rep1
GSM1354951
kidney_infected_Candida_24h.rep2
GSM1354952
kidney_infected_Candida_48h.rep1
GSM1354953
kidney_infected_Candida_48h.rep2
GSM1354954
kidney_infected_ahr1∆_Candida_24h.rep1
GSM1354955
kidney_infected_ahr1∆_Candida_24h.rep2
GSM1354956
kidney_infected_orf19.4342∆_Candida_24h.rep1
GSM1354957
kidney_infected_orf19.4342∆_Candida_24h.rep2
GSM1354958
kidney_infected_rim101∆_Candida_24h.rep1
GSM1354959
kidney_infected_rim101∆_Candida_24h.rep2
GSM1354960
uninfected_tongue_day1.rep1
GSM1354961
uninfected_tongue_day1.rep2
GSM1354962
tongue_infected_Candida_day1.rep1
GSM1354963
tongue_infected_Candida_day1.rep2
GSM1354964
uninfected_tongue_day2.rep1
GSM1354965
uninfected_tongue_day2.rep2
GSM1354966
tongue_infected_Candida_day2.rep1
GSM1354967
tongue_infected_Candida_day2.rep2
GSM1354968
uninfected_tongue_day3.rep1
GSM1354969
uninfected_tongue_day3.rep2
GSM1354970
tongue_infected_Candida_day3.rep1
GSM1354971
tongue_infected_Candida_day3.rep2
GSM1354972
uninfected_tongue_day5.rep1
GSM1354973
uninfected_tongue_day5.rep2
GSM1354974
tongue_infected_Candida_day5.rep1
GSM1354975
tongue_infected_Candida_day5.rep2
This SuperSeries is composed of the following SubSeries:
GSE56091
Characterization of transcriptome dynamics in response to contact with host cells [Phase I In Vitro]
GSE56092
Characterization of transcriptome dynamics in response to contact with host cells [Phase II In Vivo]
Relations
BioProject
PRJNA242402
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE56093_RAW.tar
25.2 Mb
(http)
(custom)
TAR (of TXT)
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