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Series GSE56463 Query DataSets for GSE56463
Status Public on Nov 25, 2015
Title Transcriptome profiling of various organs at different developmental stages in rice (single-end)
Organism Oryza sativa Japonica Group
Experiment type Expression profiling by high throughput sequencing
Summary To identificate long noncoding RNAs in rice, we profiled transcriptome of various organs at different developmental stages using stranded single-end RNA-seq based on poly(A) selection.
 
Overall design Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds.
 
Contributor(s) Wang H, Wu H, Ye J, Liu J, Chua N
Citation(s) 26387578
Submission date Apr 02, 2014
Last update date May 15, 2019
Contact name Huan Wang
E-mail(s) hwang01@rockefeller.edu
Organization name The Rockefeller University
Lab Chua Nam-Hai
Street address 1230 York Avenue
City New York
State/province New York
ZIP/Postal code 10065
Country USA
 
Platforms (1)
GPL18525 Illumina HiSeq 2500 (Oryza sativa Japonica Group)
Samples (8)
GSM1361891 F1 single-end
GSM1361892 F2 single-end
GSM1361893 L1 single-end
Relations
BioProject PRJNA243371
SRA SRP040813

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE56463_ssRNA-seq_fpkm.txt.gz 1.6 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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