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Series GSE58638 Query DataSets for GSE58638
Status Public on Feb 06, 2015
Title The effects of the global loss of DNA methylation on the functional cancer epigenome
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Other
Third-party reanalysis
Summary We compare the global histone modification patterns of HCT116 colon cancer cells with its genetic derivatives DKO1 cells which lack DNMT3B and DNMT1 activity
 
Overall design Comparison of histone marks in two cell types
 
Contributor(s) Lay FD, Liu Y, Berman B, Jones P
Citation(s) 25747664
Submission date Jun 18, 2014
Last update date May 15, 2019
Contact name Fides D Lay
E-mail(s) fidlay@ucla.edu
Organization name UCLA
Department MCDB
Street address 615 Charles E Young Drive South, BSRB 457
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platforms (2)
GPL10999 Illumina Genome Analyzer IIx (Homo sapiens)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (31)
GSM1415873 HCT116-H2A.Z
GSM1415874 HCT116-H3K4me3
GSM1415875 HCT116-H3K4me1
Relations
Reanalysis of GSM945855
BioProject PRJNA253053
SRA SRP043384

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE58638_RAW.tar 55.4 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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