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Series GSE6062 Query DataSets for GSE6062
Status Public on Feb 01, 2008
Title SAGE: gene expression in pigs of two commercial lines at the 3 and 9 months og age
Organism Sus scrofa
Experiment type Expression profiling by SAGE
Summary Muscle development is associated with a modification of mass, composition and function that in productive animals are considered responsible of meat characteristics. In this study, SAGE was employed to describe gene expression in pigs of two commercial lines at the 3 and 9 months og age. The aim was to obtained a full gene expression profile that would assist in identifying genes differentially expressed in the muscle Longissimum dorsi during normal growth. The pattern of expression between lines and ages will help to elucidate the metabolic pathways modulated by these genes during muscle development.
Keywords: SAGE, muscle, swine, age comparison, swine comparison
 
Overall design Twenty castrate pigs, 10 purebred Large White (LW) and 10 Landrace X Duroc (DU), were reared from 3 to 12 months of age in the same environmental and feeding conditions were used.
At the age of 3 and 9 month of age, Longissimum dorsi biopsy was collected from each animal of the two groups, using a Magnum Biopsy System (Bard, Covington, GA USA).
SAGE libreries were constructed for the biopsies sampled at 3 and 9 from the one Large White and one LandraceXDuroc pig. Animals were selected on the basis of the live weight and daily gains, to have the most “fat” Large White and “lean” LandraceXDuroc.
 
Contributor(s) Pallavicini A, Stefanon B, Dal Monego S
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Submission date Oct 18, 2006
Last update date Mar 16, 2012
Contact name simeone dal monego
Organization name university of trieste
Department biology
Lab genetic
Street address piazzale valmaura 9
City trieste
ZIP/Postal code 34100
Country Italy
 
Platforms (1)
GPL4061 SAGE:17:NlaIII:Sus scrofa
Samples (4)
GSM140696 Dunel (Landrace X Duroc) age 3 month
GSM140697 Dunel (Landrace X Duroc) age 9 month
GSM140698 large white age 3 month
Relations
BioProject PRJNA97743

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE6062_RAW.tar 220.0 Kb (http)(custom) TAR (of TXT)

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