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Series GSE61024 Query DataSets for GSE61024
Status Public on Jan 27, 2016
Title RNA-Seq in neurons from E16.5 mouse embryonic cortices from WT and SMCX KO mice
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We conducted RNA-Seq (using Direct Ligation of Adapters to first strand cDNA) in neurons from E16.5 mouse embryonic cortices from WT and SMCX KO mice and harvested after 10 days in vitro culture.
 
Overall design We sequenced RNA samples after 10 days in vitro cultures in biological and technical duplicates. 4 RNA samples from WT and SMCX KO neurons. We also sequenced RNA samples from same neurons after stimulation with KCl for 60 mins. So a total of 8 RNA-Seq samples.
 
Contributor(s) Iwase S, Brookes E, Agarwal S, Badeaux AI, Vallianatos CN, Shi Y
Citation(s) 26804915
Submission date Sep 02, 2014
Last update date May 15, 2019
Contact name Saurabh Agarwal
E-mail(s) saurabha@umich.edu
Phone 7346478811
Organization name University of Michigan
Department Human Genetics
Lab Shigeki Iwase
Street address 1241 E. Catherine St. 5815 Medical Science II
City Ann Arbor
State/province Michigan
ZIP/Postal code 48109
Country USA
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (8)
GSM1495635 RNASEQ_mCN_WT_Untreated_rep1
GSM1495636 RNASEQ_mCN_SMCX_KO_Untreated_rep1
GSM1495637 RNASEQ_mCN_WT_KCl_Treated_60min_rep1
This SubSeries is part of SuperSeries:
GSE61036 Aggression, cognitive and neurodevelopmental abnormalities associated with disruption of the intellectual disability and histone demethylase gene Kdm5c
Relations
BioProject PRJNA260121
SRA SRP046260

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE61024_RAW.tar 547.3 Mb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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