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Series GSE62907 Query DataSets for GSE62907
Status Public on Jan 19, 2015
Title The inactive X chromosome is epigenetically unstable and transcriptionally labile in breast cancer
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Genome variation profiling by SNP array
SNP genotyping by SNP array
Summary This SuperSeries is composed of the SubSeries listed below.
Overall design Refer to individual Series
Contributor(s) Chaligne R, Popova T, Mendoza-Parra M, Saleem MM, Gentien D, Ban K, Piolot T, Leroy O, Mariani O, Gronemeyer H, Vincent-Salomon A, Stern M, Heard E
Citation(s) 25653311
Submission date Oct 31, 2014
Last update date May 15, 2019
Contact name Ronan Chaligné
Organization name Institut Curie
Lab Edith Heard's lab
Street address 26, Rue d'Ulm
City Paris
ZIP/Postal code 75248
Country France
Platforms (3)
GPL6801 [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (39)
GSM1537273 ZR-75-1_nascentRNA_SNP6
GSM1537274 SKBR3_nascentRNA_SNP6
GSM1537275 MDAMB436_nascentRNA_SNP6
This SuperSeries is composed of the following SubSeries:
GSE62965 Identification of SNPs using genomic DNA and allele specific expression using nascent RNA on snp6 array
GSE62966 Analysis of allele specific expression and its chromatin state to identify genes that are escaping X chromosome inactivation
BioProject PRJNA266311

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE62907_RAW.tar 995.7 Mb (http)(custom) TAR (of BEDGRAPH, CEL, FPKM_TRACKING, TXT)
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