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Status
Public on Oct 30, 2003
Title
Expression of Annotated Genes
Organism
Arabidopsis thaliana Experiment type
Expression profiling by genome tiling array
Summary
Contains a row for each annotated gene in each sample, indicating whether our analysis called the gene "present" or "absent" in the sample. Gene names and coordinates refer to version 3 of the TIGR annotation as submitted to GenBank (GI numbers 22330780, 22326553, 22331929, 22329272, 22328163).
Web link
http://signal.salk.edu
Contributor(s)
Dale JM , Chen H , Cheuk R , Kim C , Lim J , Palm CJ , Shinn P , Southwick AM , Wu HC , Yamada K , Davis RW , Ecker JR , Theologis A Citation(s)
14593172 Submission date
Sep 08, 2003
Last update date
Mar 02, 2012
Contact name
Atsunari Tsuchisaka
E-mail(s)
guixiay@yahoo.com, atsunaritsuchisaka@gmail.com Phone
510-559-5924
Organization name
University of California, Berkeley / USDA
Department
Plant Gene Expression Center
Street address
800 Buchanan St.
City
Albany
State/province
CA
ZIP/Postal code
94710
Country
USA
Platforms (16)
GPL428 Arabidopsis Pilot Genome Tiling Array 1A
GPL429 Arabidopsis Pilot Genome Tiling Array 1B
GPL430 Arabidopsis Pilot Genome Tiling Array 1C
GPL431 Arabidopsis Pilot Genome Tiling Array 1D
GPL432 Arabidopsis Whole Genome Tiling Array 1-1
GPL433 Arabidopsis Whole Genome Tiling Array 1-2
GPL434 Arabidopsis Whole Genome Tiling Array 1-3
GPL435 Arabidopsis Whole Genome Tiling Array 1-4
GPL436 Arabidopsis Whole Genome Tiling Array 1-5
GPL437 Arabidopsis Whole Genome Tiling Array 1-6
GPL438 Arabidopsis Whole Genome Tiling Array 1-rc-1
GPL439 Arabidopsis Whole Genome Tiling Array 1-rc-2
GPL440 Arabidopsis Whole Genome Tiling Array 1-rc-3
GPL441 Arabidopsis Whole Genome Tiling Array 1-rc-4
GPL442 Arabidopsis Whole Genome Tiling Array 1-rc-5
GPL443 Arabidopsis Whole Genome Tiling Array 1-rc-6
Samples (72)
Relations BioProject
PRJNA87547
annotated-gene-expression header descriptions SAMPLE Sample accession number
GENE Gene name in TIGR annotation
COORDS Genomic coordinates of gene coding region
CALL Whether gene coding region is present or absent in sample
Data table SAMPLE GENE COORDS CALL GSM8942 At1g01010 join(3760..3913,3996..4276,4486..4605,4706..5095,5174..5326,5439..5630)
absent
GSM8942 At1g01040 join(23519..24451,24542..24655,24752..24962,25041..25435,25524..25743,25825..25997,26081..26203,26292..26452,26543..26776,26862..27012,27099..27281,27372..27533,27618..27713,27803..28431,28708..28805,28890..29080,29160..30065,30147..30311,30410..30816,30902..31079)
absent
GSM8942 At1g01110 join(53022..53183,53484..53624,53703..54494)
present
GSM8942 At1g01160 join(72583..72669,73087..73163,73287..73395,73488..73740,73822..73883)
present
GSM8942 At1g01180 join(75633..76547,76814..76951,77031..77280,77313..77446)
absent
GSM8942 At1g01210 join(88977..89081,89173..89263,89405..89529)
present
GSM8942 At1g01220 join(91750..92070,92270..92501,92569..92933,93045..93171,93271..94281,94357..95075,95160..95552)
present
GSM8942 At1g01225 join(96064..96157,96554..97242)
absent
GSM8942 At1g01230 join(97620..97805,98457..98605,98908..99046)
present
GSM8942 At1g01240 100683..101678
absent
GSM8942 At1g01260 109595..111367
present
GSM8942 At1g01280 join(112290..113195,113279..113905)
absent
GSM8942 At1g01290 join(114299..114433,114619..115296)
present
GSM8942 At1g01300 117065..118522
present
GSM8942 At1g01310 join(119429..119732,120366..120946)
present
GSM8942 At1g01350 join(136732..136816,136935..137758,137848..137966,138522..138778,138863..139114,139203..139345,139488..139568)
present
GSM8942 At1g01360 join(142138..142281,142424..142639,142711..142914)
present
GSM8942 At1g01370 join(143773..143824,143934..143977,144064..144109,144193..144227,144315..144351,144447..144559,144927..145004,145132..145207,145345..145400)
present
GSM8942 At1g01380 join(147267..147333,147452..147539,147644..147740)
absent
GSM8942 At1g01410 153113..154198
absent
115526 14520 Kbytes .Supplementary data files not provided
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