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Series GSE636 Query DataSets for GSE636
Status Public on Oct 30, 2003
Title Expression of Annotated Genes
Organism Arabidopsis thaliana
Experiment type Expression profiling by genome tiling array
Summary Contains a row for each annotated gene in each sample, indicating whether our analysis called the gene "present" or "absent" in the sample. Gene names and coordinates refer to version 3 of the TIGR annotation as submitted to GenBank (GI numbers 22330780, 22326553, 22331929, 22329272, 22328163).
Keywords: other
Web link
Contributor(s) Dale JM, Chen H, Cheuk R, Kim C, Lim J, Palm CJ, Shinn P, Southwick AM, Wu HC, Yamada K, Davis RW, Ecker JR, Theologis A
Citation(s) 14593172
Submission date Sep 08, 2003
Last update date Mar 02, 2012
Contact name Atsunari Tsuchisaka
Phone 510-559-5924
Organization name University of California, Berkeley / USDA
Department Plant Gene Expression Center
Street address 800 Buchanan St.
City Albany
State/province CA
ZIP/Postal code 94710
Country USA
Platforms (16)
GPL428 Arabidopsis Pilot Genome Tiling Array 1A
GPL429 Arabidopsis Pilot Genome Tiling Array 1B
GPL430 Arabidopsis Pilot Genome Tiling Array 1C
Samples (72)
GSM8942 FL 1-1
GSM8943 RT 1-1
GSM8944 SC 1-1
BioProject PRJNA87547

annotated-gene-expression header descriptions
SAMPLE Sample accession number
GENE Gene name in TIGR annotation
COORDS Genomic coordinates of gene coding region
CALL Whether gene coding region is present or absent in sample

Data table
GSM8942 At1g01010 join(3760..3913,3996..4276,4486..4605,4706..5095,5174..5326,5439..5630) absent
GSM8942 At1g01040 join(23519..24451,24542..24655,24752..24962,25041..25435,25524..25743,25825..25997,26081..26203,26292..26452,26543..26776,26862..27012,27099..27281,27372..27533,27618..27713,27803..28431,28708..28805,28890..29080,29160..30065,30147..30311,30410..30816,30902..31079) absent
GSM8942 At1g01110 join(53022..53183,53484..53624,53703..54494) present
GSM8942 At1g01160 join(72583..72669,73087..73163,73287..73395,73488..73740,73822..73883) present
GSM8942 At1g01180 join(75633..76547,76814..76951,77031..77280,77313..77446) absent
GSM8942 At1g01210 join(88977..89081,89173..89263,89405..89529) present
GSM8942 At1g01220 join(91750..92070,92270..92501,92569..92933,93045..93171,93271..94281,94357..95075,95160..95552) present
GSM8942 At1g01225 join(96064..96157,96554..97242) absent
GSM8942 At1g01230 join(97620..97805,98457..98605,98908..99046) present
GSM8942 At1g01240 100683..101678 absent
GSM8942 At1g01260 109595..111367 present
GSM8942 At1g01280 join(112290..113195,113279..113905) absent
GSM8942 At1g01290 join(114299..114433,114619..115296) present
GSM8942 At1g01300 117065..118522 present
GSM8942 At1g01310 join(119429..119732,120366..120946) present
GSM8942 At1g01350 join(136732..136816,136935..137758,137848..137966,138522..138778,138863..139114,139203..139345,139488..139568) present
GSM8942 At1g01360 join(142138..142281,142424..142639,142711..142914) present
GSM8942 At1g01370 join(143773..143824,143934..143977,144064..144109,144193..144227,144315..144351,144447..144559,144927..145004,145132..145207,145345..145400) present
GSM8942 At1g01380 join(147267..147333,147452..147539,147644..147740) absent
GSM8942 At1g01410 153113..154198 absent

Total number of rows: 115526

Table truncated, full table size 14520 Kbytes.

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary data files not provided

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