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Series GSE63629 Query DataSets for GSE63629
Status Public on Jun 08, 2015
Title Genome-wide maps of SOX9 binding sites in human colorectal cancer cells
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Aberrant expression of SOX9 in human colorectal cancer cells suggests its roles in the development of colorectal cancer. To gain insight into SOX9-mediated transcriptional regulation in colorectal cancer cells, we attempted to identify its physiological targets on a genome-scale using chromatin immunoprecipitation (ChIP) followed by sequencing (ChIP-seq) in HT-29, human colorectal cancer cells.
 
Overall design SOX9 CHIP-seq was carried out using HT-29 cells.
 
Contributor(s) Mori-Akiyama Y, Shi Z, Chiang CI, Mistretta TA
Citation(s) 26040697
Submission date Nov 25, 2014
Last update date May 15, 2019
Contact name Toni-Ann Mistretta
E-mail(s) toniannm@bcm.edu
Organization name Baylor College of Medicine
Department Pathology
Lab TCH Pathology\TCMC
Street address 1 Baylor Plaza, BCM 315
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (2)
GSM1554224 SOX9_ChIPSeq
GSM1554225 input DNA
Relations
BioProject PRJNA268497
SRA SRP050256

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE63629_RAW.tar 411.3 Mb (http)(custom) TAR (of BAR, BED, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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