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Status
Public on Oct 30, 2003
Title
Antisense Expression of Annotated Genes
Organism
Arabidopsis thaliana Experiment type
Expression profiling by genome tiling array
Summary
Contains a row for each annotated gene in each sample, indicating whether our analysis called the region antisense to the coding region of the gene "present" or "absent" in the sample. Gene names and coordinates refer to version 3 of the TIGR annotation as submitted to GenBank (GI numbers 22330780, 22326553, 22331929, 22329272, 22328163).
Web link
http://signal.salk.edu
Contributor(s)
Dale JM , Chen H , Cheuk R , Kim C , Lim J , Palm CJ , Shinn P , Southwick AM , Wu HC , Yamada K , Davis RW , Ecker JR , Theologis A Citation(s)
14593172 Submission date
Sep 08, 2003
Last update date
Mar 02, 2012
Contact name
Atsunari Tsuchisaka
E-mail(s)
guixiay@yahoo.com, atsunaritsuchisaka@gmail.com Phone
510-559-5924
Organization name
University of California, Berkeley / USDA
Department
Plant Gene Expression Center
Street address
800 Buchanan St.
City
Albany
State/province
CA
ZIP/Postal code
94710
Country
USA
Platforms (16)
GPL428 Arabidopsis Pilot Genome Tiling Array 1A
GPL429 Arabidopsis Pilot Genome Tiling Array 1B
GPL430 Arabidopsis Pilot Genome Tiling Array 1C
GPL431 Arabidopsis Pilot Genome Tiling Array 1D
GPL432 Arabidopsis Whole Genome Tiling Array 1-1
GPL433 Arabidopsis Whole Genome Tiling Array 1-2
GPL434 Arabidopsis Whole Genome Tiling Array 1-3
GPL435 Arabidopsis Whole Genome Tiling Array 1-4
GPL436 Arabidopsis Whole Genome Tiling Array 1-5
GPL437 Arabidopsis Whole Genome Tiling Array 1-6
GPL438 Arabidopsis Whole Genome Tiling Array 1-rc-1
GPL439 Arabidopsis Whole Genome Tiling Array 1-rc-2
GPL440 Arabidopsis Whole Genome Tiling Array 1-rc-3
GPL441 Arabidopsis Whole Genome Tiling Array 1-rc-4
GPL442 Arabidopsis Whole Genome Tiling Array 1-rc-5
GPL443 Arabidopsis Whole Genome Tiling Array 1-rc-6
Samples (72)
Relations BioProject
PRJNA87549
antisense-annotated-gene-expression header descriptions SAMPLE Sample accession number
GENE Gene name in TIGR annotation
COORDS Genomic coordinates of gene coding region
CALL Whether region antisense to gene coding region is present or absent in sample
Data table SAMPLE GENE COORDS CALL GSM8942 At1g01020 complement(join(7729..7835,7942..7987,8236..8325,8417..8464,8571..8666))
absent
GSM8942 At1g01030 complement(11864..12940)
absent
GSM8942 At1g01050 complement(join(31382..31424,31521..31602,31693..31813,31933..31998,32088..32195,32282..32347,32431..32459,32547..32670))
absent
GSM8942 At1g01060 complement(join(33992..34327,34401..35474,35567..35647,35730..35963,36624..36685,36810..36921,37023..37061))
absent
GSM8942 At1g01070 complement(join(38898..39054,39136..39287,39409..39814,40213..40329,40473..40535,40675..40877))
absent
GSM8942 At1g01080 complement(join(45503..45559,45646..45954,46044..46145,46376..46789))
absent
GSM8942 At1g01090 complement(join(47705..47982,48075..48852,48936..49166))
present
GSM8942 At1g01120 complement(57392..58978)
absent
GSM8942 At1g01130 complement(join(61963..62124,63431..63811))
absent
GSM8942 At1g01140 complement(join(64398..64475,64582..64656,64751..64807,64901..65017,65110..65217,65331..65456,65563..65652,65739..65864,66107..66160,66262..66342,66450..66557,66678..66749,66835..66897,67324..67512))
absent
GSM8942 At1g01150 complement(join(70115..70285,70840..70968,71041..71721,71942..71998))
present
GSM8942 At1g01170 complement(join(74105..74250,74338..74443))
absent
GSM8942 At1g01190 complement(join(83045..83671,83884..84864))
absent
GSM8942 At1g01200 complement(join(86715..87156,87880..88085))
absent
GSM8942 At1g01250 complement(104731..105309)
present
GSM8942 At1g01320 complement(join(121582..123495,123579..123669,123785..123897,123992..124123,124211..124394,124499..124632,124714..124818,124921..125022,125134..125226,125329..125604))
absent
GSM8942 At1g01330 complement(join(125932..126589,126686..126840,126935..127453,127532..127573,127651..127782,127868..127935,128028..128312,128479..128551,128968..129060,129853..129914,130039..130099))
absent
GSM8942 At1g01340 complement(join(132414..132744,132824..133218,133303..133539,133641..133752,133911..134206,134289..134501,134582..135118))
absent
GSM8942 At1g01390 complement(148319..149761)
absent
GSM8942 At1g01400 complement(join(151158..151298,151393..151731,151932..152002,152086..152149))
present
115526 14495 Kbytes .Supplementary data files not provided
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