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Series GSE637 Query DataSets for GSE637
Status Public on Oct 30, 2003
Title Antisense Expression of Annotated Genes
Organism Arabidopsis thaliana
Experiment type Expression profiling by genome tiling array
Summary Contains a row for each annotated gene in each sample, indicating whether our analysis called the region antisense to the coding region of the gene "present" or "absent" in the sample. Gene names and coordinates refer to version 3 of the TIGR annotation as submitted to GenBank (GI numbers 22330780, 22326553, 22331929, 22329272, 22328163).
Keywords: other
Web link
Contributor(s) Dale JM, Chen H, Cheuk R, Kim C, Lim J, Palm CJ, Shinn P, Southwick AM, Wu HC, Yamada K, Davis RW, Ecker JR, Theologis A
Citation(s) 14593172
Submission date Sep 08, 2003
Last update date Mar 02, 2012
Contact name Atsunari Tsuchisaka
Phone 510-559-5924
Organization name University of California, Berkeley / USDA
Department Plant Gene Expression Center
Street address 800 Buchanan St.
City Albany
State/province CA
ZIP/Postal code 94710
Country USA
Platforms (16)
GPL428 Arabidopsis Pilot Genome Tiling Array 1A
GPL429 Arabidopsis Pilot Genome Tiling Array 1B
GPL430 Arabidopsis Pilot Genome Tiling Array 1C
Samples (72)
GSM8942 FL 1-1
GSM8943 RT 1-1
GSM8944 SC 1-1
BioProject PRJNA87549

antisense-annotated-gene-expression header descriptions
SAMPLE Sample accession number
GENE Gene name in TIGR annotation
COORDS Genomic coordinates of gene coding region
CALL Whether region antisense to gene coding region is present or absent in sample

Data table
GSM8942 At1g01020 complement(join(7729..7835,7942..7987,8236..8325,8417..8464,8571..8666)) absent
GSM8942 At1g01030 complement(11864..12940) absent
GSM8942 At1g01050 complement(join(31382..31424,31521..31602,31693..31813,31933..31998,32088..32195,32282..32347,32431..32459,32547..32670)) absent
GSM8942 At1g01060 complement(join(33992..34327,34401..35474,35567..35647,35730..35963,36624..36685,36810..36921,37023..37061)) absent
GSM8942 At1g01070 complement(join(38898..39054,39136..39287,39409..39814,40213..40329,40473..40535,40675..40877)) absent
GSM8942 At1g01080 complement(join(45503..45559,45646..45954,46044..46145,46376..46789)) absent
GSM8942 At1g01090 complement(join(47705..47982,48075..48852,48936..49166)) present
GSM8942 At1g01120 complement(57392..58978) absent
GSM8942 At1g01130 complement(join(61963..62124,63431..63811)) absent
GSM8942 At1g01140 complement(join(64398..64475,64582..64656,64751..64807,64901..65017,65110..65217,65331..65456,65563..65652,65739..65864,66107..66160,66262..66342,66450..66557,66678..66749,66835..66897,67324..67512)) absent
GSM8942 At1g01150 complement(join(70115..70285,70840..70968,71041..71721,71942..71998)) present
GSM8942 At1g01170 complement(join(74105..74250,74338..74443)) absent
GSM8942 At1g01190 complement(join(83045..83671,83884..84864)) absent
GSM8942 At1g01200 complement(join(86715..87156,87880..88085)) absent
GSM8942 At1g01250 complement(104731..105309) present
GSM8942 At1g01320 complement(join(121582..123495,123579..123669,123785..123897,123992..124123,124211..124394,124499..124632,124714..124818,124921..125022,125134..125226,125329..125604)) absent
GSM8942 At1g01330 complement(join(125932..126589,126686..126840,126935..127453,127532..127573,127651..127782,127868..127935,128028..128312,128479..128551,128968..129060,129853..129914,130039..130099)) absent
GSM8942 At1g01340 complement(join(132414..132744,132824..133218,133303..133539,133641..133752,133911..134206,134289..134501,134582..135118)) absent
GSM8942 At1g01390 complement(148319..149761) absent
GSM8942 At1g01400 complement(join(151158..151298,151393..151731,151932..152002,152086..152149)) present

Total number of rows: 115526

Table truncated, full table size 14495 Kbytes.

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary data files not provided

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