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| Status |
Public on Aug 01, 2018 |
| Title |
Identification and Differential Expression of MicroRNAs during Cold Acclimation of the Tea Plant (Camellia sinensis) by Deep Sequencing |
| Organism |
Camellia sinensis |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
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| Summary |
In this study, we performed deep sequencing and bioinformatics analyses of tea plant leaves to identify and characterize known and novel miRNAs. A total of 26,876,261 raw reads were produced from 2 libraries. We detected 422 known miRNAs belonging to 125 families, and 68 putative novel miRNAs.
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| Overall design |
The miRNA profiles of non-acclimated (CK, the date for sample collection was 1st December, 2010) and fully acclimated (CA1, the date was 29th December, 2010) were generated by deep sequencing, using Illumina Solexa.
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| Contributor(s) |
Wang X, Yang Y |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Dec 02, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Lu Wang |
| E-mail(s) |
wanglu317@tricaas.com
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| Organization name |
Tea Research Institute, Chinese Academy of Agricultural Sciences
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| Street address |
9th, South Meiling Road
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| City |
Hangzhou |
| State/province |
Zhejiang |
| ZIP/Postal code |
310008 |
| Country |
China |
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| Platforms (1) |
| GPL19477 |
Illumina Genome Analyzer (Camellia sinensis) |
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| Samples (2) |
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| Relations |
| BioProject |
PRJNA269020 |
| SRA |
SRP050417 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE63760_RAW.tar |
129.5 Mb |
(http)(custom) |
TAR (of FA, TXT) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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