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Series GSE639 Query DataSets for GSE639
Status Public on Oct 30, 2003
Title Expression in Intergenic Regions
Organism Arabidopsis thaliana
Experiment type Expression profiling by genome tiling array
Summary Contains a row for each intergenic region in each sample, indicating whether our analysis called a window within the region "present" or "absent" in the sample. Intergenic regions are regions containing neither annotated genes nor intergenic clusters. Region coordinates refer to version 3 of the TIGR annotation as submitted to GenBank (GI numbers 22330780, 22326553, 22331929, 22329272, 22328163).
Keywords: other
 
Web link http://signal.salk.edu
 
Contributor(s) Dale JM, Chen H, Cheuk R, Kim C, Lim J, Palm CJ, Shinn P, Southwick AM, Wu HC, Yamada K, Davis RW, Ecker JR, Theologis A
Citation(s) 14593172
Submission date Sep 08, 2003
Last update date Mar 02, 2012
Contact name Atsunari Tsuchisaka
E-mail(s) guixiay@yahoo.com, atsunaritsuchisaka@gmail.com
Phone 510-559-5924
Organization name University of California, Berkeley / USDA
Department Plant Gene Expression Center
Street address 800 Buchanan St.
City Albany
State/province CA
ZIP/Postal code 94710
Country USA
 
Platforms (16)
GPL428 Arabidopsis Pilot Genome Tiling Array 1A
GPL429 Arabidopsis Pilot Genome Tiling Array 1B
GPL430 Arabidopsis Pilot Genome Tiling Array 1C
Samples (72)
GSM8942 FL 1-1
GSM8943 RT 1-1
GSM8944 SC 1-1
Relations
BioProject PRJNA87553

intergenic-region-expression header descriptions
SAMPLE Sample accession number
CHROMOSOME Chromosome on which region is located
START Genomic coordinate of start of region
END Genomic coordinate of end of region
STRAND If region is present, the strand on which the maximum intensity window in the region is located (+ or -); N/A otherwise
MAXPOS If region is present, the genomic position of the maximum intensity window in the region; -1 otherwise
CALL Whether region is present or absent in sample

Data table
SAMPLE CHROMOSOME START END STRAND MAXPOS CALL
GSM8942 1 9666 10864 N/A -1 absent
GSM8942 1 13940 22519 N/A -1 absent
GSM8942 1 41877 44503 N/A -1 absent
GSM8942 1 50166 52022 N/A -1 absent
GSM8942 1 55494 56392 N/A -1 absent
GSM8942 1 59978 60963 N/A -1 absent
GSM8942 1 68512 69115 N/A -1 absent
GSM8942 1 78446 80731 N/A -1 absent
GSM8942 1 90529 90750 N/A -1 absent
GSM8942 1 102678 103731 N/A -1 absent
GSM8942 1 106309 108595 N/A -1 absent
GSM8942 1 131099 131414 N/A -1 absent
GSM8942 1 140568 141138 N/A -1 absent
GSM8942 1 166517 168115 + 167401 present
GSM8942 1 173826 174862 N/A -1 absent
GSM8942 1 179051 179401 N/A -1 absent
GSM8942 1 183066 184260 N/A -1 absent
GSM8942 1 194662 194980 N/A -1 absent
GSM8942 1 199383 199526 N/A -1 absent
GSM8942 1 228176 228206 N/A -1 absent

Total number of rows: 74736

Table truncated, full table size 3038 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary data files not provided

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