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Status
Public on Oct 30, 2003
Title
Expression in Intergenic Regions
Organism
Arabidopsis thaliana
Experiment type
Expression profiling by genome tiling array
Summary
Contains a row for each intergenic region in each sample, indicating whether our analysis called a window within the region "present" or "absent" in the sample. Intergenic regions are regions containing neither annotated genes nor intergenic clusters. Region coordinates refer to version 3 of the TIGR annotation as submitted to GenBank (GI numbers 22330780, 22326553, 22331929, 22329272, 22328163). Keywords: other
Web link
http://signal.salk.edu
Contributor(s)
Dale JM , Chen H , Cheuk R , Kim C , Lim J , Palm CJ , Shinn P , Southwick AM , Wu HC , Yamada K , Davis RW , Ecker JR , Theologis A
Citation(s)
14593172
Submission date
Sep 08, 2003
Last update date
Mar 02, 2012
Contact name
Atsunari Tsuchisaka
E-mail(s)
guixiay@yahoo.com, atsunaritsuchisaka@gmail.com
Phone
510-559-5924
Organization name
University of California, Berkeley / USDA
Department
Plant Gene Expression Center
Street address
800 Buchanan St.
City
Albany
State/province
CA
ZIP/Postal code
94710
Country
USA
Platforms (16)
GPL428
Arabidopsis Pilot Genome Tiling Array 1A
GPL429
Arabidopsis Pilot Genome Tiling Array 1B
GPL430
Arabidopsis Pilot Genome Tiling Array 1C
GPL431
Arabidopsis Pilot Genome Tiling Array 1D
GPL432
Arabidopsis Whole Genome Tiling Array 1-1
GPL433
Arabidopsis Whole Genome Tiling Array 1-2
GPL434
Arabidopsis Whole Genome Tiling Array 1-3
GPL435
Arabidopsis Whole Genome Tiling Array 1-4
GPL436
Arabidopsis Whole Genome Tiling Array 1-5
GPL437
Arabidopsis Whole Genome Tiling Array 1-6
GPL438
Arabidopsis Whole Genome Tiling Array 1-rc-1
GPL439
Arabidopsis Whole Genome Tiling Array 1-rc-2
GPL440
Arabidopsis Whole Genome Tiling Array 1-rc-3
GPL441
Arabidopsis Whole Genome Tiling Array 1-rc-4
GPL442
Arabidopsis Whole Genome Tiling Array 1-rc-5
GPL443
Arabidopsis Whole Genome Tiling Array 1-rc-6
Samples (72)
Relations
BioProject
PRJNA87553
intergenic-region-expression header descriptions
SAMPLE
Sample accession number
CHROMOSOME
Chromosome on which region is located
START
Genomic coordinate of start of region
END
Genomic coordinate of end of region
STRAND
If region is present, the strand on which the maximum intensity window in the region is located (+ or -); N/A otherwise
MAXPOS
If region is present, the genomic position of the maximum intensity window in the region; -1 otherwise
CALL
Whether region is present or absent in sample
Data table
SAMPLE
CHROMOSOME
START
END
STRAND
MAXPOS
CALL
GSM8942
1
9666
10864
N/A
-1
absent
GSM8942
1
13940
22519
N/A
-1
absent
GSM8942
1
41877
44503
N/A
-1
absent
GSM8942
1
50166
52022
N/A
-1
absent
GSM8942
1
55494
56392
N/A
-1
absent
GSM8942
1
59978
60963
N/A
-1
absent
GSM8942
1
68512
69115
N/A
-1
absent
GSM8942
1
78446
80731
N/A
-1
absent
GSM8942
1
90529
90750
N/A
-1
absent
GSM8942
1
102678
103731
N/A
-1
absent
GSM8942
1
106309
108595
N/A
-1
absent
GSM8942
1
131099
131414
N/A
-1
absent
GSM8942
1
140568
141138
N/A
-1
absent
GSM8942
1
166517
168115
+
167401
present
GSM8942
1
173826
174862
N/A
-1
absent
GSM8942
1
179051
179401
N/A
-1
absent
GSM8942
1
183066
184260
N/A
-1
absent
GSM8942
1
194662
194980
N/A
-1
absent
GSM8942
1
199383
199526
N/A
-1
absent
GSM8942
1
228176
228206
N/A
-1
absent
Total number of rows: 74736 Table truncated, full table size 3038 Kbytes .
Supplementary data files not provided