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Series GSE64144 Query DataSets for GSE64144
Status Public on Dec 20, 2014
Title Evaluation of methyl-binding domain based enrichment approaches revisited
Organism Mus musculus
Experiment type Methylation profiling by high throughput sequencing
Summary A comparison of methylMiner and MethylCap, two methylation enrichment kits
Overall design The main analysis include two individuals (mice) in technical duplicates from various lab/technical conditions. The results are compared with previous studies of two human samples from a number of lab/technical conditions (human data available at dbGaP: record number phs000608.v1.p1). In addition a DNA from a third mouse is used for investigations of specific alterations of the protocol.
Contributor(s) Aberg KA, Xie L, Chan RF, Zhao M, Pandey AK, Kumar G, Clark S, van den Oord EJ
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Submission date Dec 12, 2014
Last update date May 15, 2019
Contact name Karolina A Aberg
Organization name Virginia Commonwealth University
Department Center for Biomarker Resarch & Personalized Medicine
Street address 1112 East Clay Street
City Richmond
State/province VA
ZIP/Postal code 23298
Country USA
Platforms (1)
GPL18061 AB 5500xl-W Genetic Analysis System (Mus musculus)
Samples (10)
GSM1565259 7sr3t
GSM1565260 8b1
GSM1565261 8B2
BioProject PRJNA270249
SRA SRP051120

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE64144_RAW.tar 1.6 Gb (http)(custom) TAR (of TAR)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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