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Series GSE64241 Query DataSets for GSE64241
Status Public on Dec 17, 2014
Title Affymetrix SNP copy number data for embryonic stem cell samples
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
SNP genotyping by SNP array
Summary Human pluripotent stem cell (hPSC) lines exhibit repeated patterns of genetic variation, which can alter in vitro properties as well as suitability for clinical use. We examined associations between copy number variations (CNVs) on chromosome 17 and hPSC mesodiencephalic dopaminergic (mDA) differentiation.
Overall design Affymetrix SNP arrays were performed according to the manufacturer's directions on DNA extracted from cryopreserved stem cell samples.
Copy number analysis of Affymetrix Genome-Wide Human SNP Array 6.0 was performed for 17 stem cell samples.
Contributor(s) Freed W
Citation(s) 25640183
Submission date Dec 16, 2014
Last update date Nov 27, 2018
Contact name William Freed
Organization name NIDA NIH
Street address 333 CASSELL DRIVE
State/province MD
ZIP/Postal code 21224
Country USA
Platforms (1)
GPL6801 [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array
Samples (17)
GSM1566870 stem cell line BG01A
GSM1566871 stem cell line BG01B
GSM1566872 stem cell line BG01C
BioProject PRJNA270524

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE64241_RAW.tar 1.1 Gb (http)(custom) TAR (of CEL, CNCHP, CNVCHP)
GSE64241_copy_number.txt.gz 117.7 Kb (ftp)(http) TXT
GSE64241_snp.txt.gz 139.9 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record
Processed data provided as supplementary file

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