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Series GSE64368 Query DataSets for GSE64368
Status Public on Dec 22, 2014
Title Urban waterways microbial communities (Affymetrix)
Platform organism Bacteria
Sample organism mixed sample
Experiment type Genome variation profiling by array
Summary The increased urban pressures are often associated with specialization of microbial communities. Microbial communities being a critical player in the geochemical processes, makes it important to identify key environmental parameters that influence the community structure and its function.In this proect we study the influence of land use type and environmental parameters on the structure and function of microbial communities. The present study was conducted in an urban catchment, where the metal and pollutants levels are under allowable limits. The overall goal of this study is to understand the role of engineered physicochemical environment on the structure and function of microbial communities in urban storm-water canals. Microbial community structure was determined using PhyoChio (G3)
Overall design Water and sediment samples were collected after a rain event from Sungei Ulu Pandan watershed of >25km2, which has two major land use types: Residential and industrial. Samples were analyzed for physicochemical variables and microbial community structure and composition. Microbial community structure was determined using PhyoChio (G3)
Contributor(s) Saxena G, Marzinelli EM, Naing NN, He Z, Liang Y, Tom L, Mitra S, Ping H, Joshi UM, Reuben S, Mynampati KC, Mishra S, Umashankar S, Zhou J, Andersen G, Kjelleberg S, Swarup S
Citation(s) 25564876
Submission date Dec 19, 2014
Last update date Jan 12, 2015
Contact name Gourvendu Saxena
Phone +6596775871
Organization name National University of Singapore
Department The Singapore Centre on Environmental Life Sciences Engineering
Street address #05-02, 28 Medical Drive
City Singapore
State/province Singapore (General)
ZIP/Postal code 117456
Country Singapore
Platforms (1)
GPL19572 [PhyloChip] Affymetrix G3 PhyloChip
Samples (23)
GSM1569588 I2_S
GSM1569589 I1_S
GSM1569590 I6_S
This SubSeries is part of SuperSeries:
GSE64376 Urban waterways microbial communities
BioProject PRJNA270850

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE64368_RAW.tar 131.5 Mb (http)(custom) TAR (of CEL)
GSE64368_README_PhyloChip_Saxena_2015.txt 3.9 Kb (ftp)(http) TXT
GSE64368_subfamily_binary_matrix.txt.gz 25.6 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record

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