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Series GSE65181 Query DataSets for GSE65181
Status Public on Jan 22, 2016
Title Genomic profiling of IPMN with an associated invasive carcinomas (IPMN-inv) and invasive ductal carcinomas (IDC) by array-based comparative genomic hybridization
Organism Homo sapiens
Experiment type Genome variation profiling by array
Summary In this study, we aimed to identify gene abnormalities necessary for the transformation from carcinoma in situ (CIS) of pancreas to invasive PC. We compared the genomic profiles of paired samples from invasive region and CIS region of the identical IPMN-inv. We further determined genomic profiles of IDC.
 
Overall design 10 CIS region of IPMN-inv vs control (genomic DNA was extracted from normal renal cortex obtained from 12 patients with ureteral or renal pelvic carcinoma). 10 invasive region of IPMN-inv vs control (genomic DNA was extracted from normal renal cortex obtained from 12 patients with ureteral or renal pelvic carcinoma) 19 IDCs vs control (genomic DNA was extracted from normal renal cortex obtained from 12 patients with ureteral or renal pelvic carcinoma)
 
Contributor(s) Hijiya N, Tsukamoto Y, Nakada C, Lam Tung N, Kai T, Matsuura K, Shibata K, Inomata M, Uchida T, Tokunaga A, Amada K, Shirao K, Yamada Y, Mori H, Takeuchi I, Seto M, Aoki M, Takekawa M, Moriyama M
Citation(s) 26941286
Submission date Jan 22, 2015
Last update date Apr 24, 2016
Contact name Naoki Hijiya
E-mail(s) hijiya@oita-u.ac.jp
Phone 1975865693
Organization name Oita University
Department Medicine
Lab Molecular pathology
Street address 1-1, Idaigaoka Hasama-machi
City Yufu
State/province Oita
ZIP/Postal code 879-5593
Country Japan
 
Platforms (1)
GPL9128 Agilent-014693 Human Genome CGH Microarray 244A (Probe name version)
Samples (39)
GSM1588638 CIS region of IPMN-inv (Case 14)
GSM1588639 Invasive region of IPMN-inv (Case 14)
GSM1588640 CIS region of IPMN-inv (Case 20)
Relations
BioProject PRJNA273354

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE65181_Aberration_summary__IPMN-inv__IDC_.xlsx.gz 100.6 Mb (ftp)(http) XLSX
GSE65181_RAW.tar 917.8 Mb (http)(custom) TAR (of TXT)
Processed data are available on Series record
Processed data included within Sample table

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