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Series GSE67958 Query DataSets for GSE67958
Status Public on May 01, 2015
Title Host transcriptional reprogramming in response to the rice bacterial blight pathogen Xanthomonas oryzae pv.oryzae constitutively expressing the X. oryzae pv. oryzicola TAL2a effector from the high copy vector pKEB31
Organism Oryza sativa Japonica Group
Experiment type Expression profiling by high throughput sequencing
Summary We performed RNA-Seq of leaves of Oryza sativa L. ssp. japonica cv. Nipponbare 48 hours after inoculation with  Xanthomonas oryzae pv. oryzae strain PXO99A heterologously expressing the Tal2a effector, the designer TAL effector dT280 which targets a sequence overlapping the predicted Tal2a binding sequence in UCH, or the Tal11b effector. Results provide insight into the genes differentially regulated in a Tal2a- and dT280-specific manner.
 
Overall design Examination of mRNA levels in Oryza sativa L. ssp. japonica cv. Nipponbare leaves at 48 hours after inoculation. Each leaf was considered a separate biological replicate.
 
Contributor(s) Hummel AW, Wilkins KE, Wang L, Cernadas RA, Bogdanove AJ
Citation(s) 26821568
Submission date Apr 16, 2015
Last update date May 15, 2019
Contact name Adam Bogdanove
E-mail(s) boglab@gmail.com
Phone (607) 255-7831
Organization name Cornell University
Department Plant Pathology and Plant-Microbe Biology
Lab Bogdanove Lab
Street address 334 Plant Science Building
City Ithaca
State/province NY
ZIP/Postal code 14853
Country USA
 
Platforms (1)
GPL13834 Illumina HiSeq 2000 (Oryza sativa Japonica Group)
Samples (6)
GSM1659653 PXO99A with BLS256 Tal2a replicate 1
GSM1659654 PXO99A with BLS256 Tal2a replicate 2
GSM1659655 PXO99A with dTal280 replicate 1
Relations
BioProject PRJNA281369
SRA SRP057260

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE67958_RAW.tar 1.1 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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