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| Status |
Public on Nov 02, 2015 |
| Title |
Next Generation Sequencing Analysis of Wild Type and Rfx2-/- Testicular Transcriptomes [ChIP-Seq] |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
Purpose: This study was carried out to determine the consequences of the Rfx2-/- genotype on spermatogenesis in the mouse
Methods: DNA was extracted from decapsulated testes of 21 day old mice. ChIP sequencing was used to determine the binding sites of RFX2.
Results: ChIP-Seq analysis identified ~880 binding sites of RFX2 near TSS.
Conclusion: Spermatogenesis undergoes complete arrest just prior to the end of the round spermatid period of sperm development in mutant mice. Sequencing results showed that approximately 105 genes were downregulated 2 fold or more in the testes of mutant mice. Comparison of similar studies of targeted mutations in genes for other transcription factor demonstrate that Rfx2 has a large and nearly unique set of genes that depend on it directly or indirectly. A large number of downregulated genes are identified with cilia function.
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| |
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| Overall design |
Testicular RFX2 binding sites were determined by deep sequencing using testes from 2 independentWT mice
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| Contributor(s) |
Kistler WS, Baas D, Lemeille S, Paschaki M, Barras E, Ma W, Duteyrat J, Morlé L, Durand B, Reith W |
| Citation(s) |
26162102 |
| |
| Submission date |
Apr 27, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Sylvain LEMEILLE |
| Organization name |
University of Geneva Medical School
|
| Department |
Department of Pathology and Immunology
|
| Street address |
1 rue Michel-Servet
|
| City |
Geneva |
| ZIP/Postal code |
1211 |
| Country |
Switzerland |
| |
|
| Platforms (1) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
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| Samples (4)
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| This SubSeries is part of SuperSeries: |
| GSE63130 |
Next Generation Sequencing Analysis of Wild Type and Rfx2-/- Testicular Transcriptomes |
|
| Relations |
| SRA |
SRP057695 |
| BioProject |
PRJNA282464 |
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