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GEO accession:
Series GSE70388
Query DataSets for GSE70388
Status
Public on Aug 01, 2015
Title
SpDamID: Marking DNA Bound by Protein Complexes Identifies Notch-Dimer Responsive Enhancers [array]
Organism
Mus musculus
Experiment type
Genome binding/occupancy profiling by array
Summary
Development of an alternative method to ChIP for the identification of DNA bound by transcriptional complexes assayed using Nimblegen arrays
Overall design
Nimblegen promoter arrays allowing identification of sites bound by different Notch complexes using SpDamID
Contributor(s)
Kopan R
,
Hass M
Citation(s)
26257285
Submission date
Jun 29, 2015
Last update date
Dec 20, 2024
Contact name
Matthew Weirauch
E-mail(s)
Matthew.Weirauch@cchmc.org
Organization name
Cincinnati Children's Hospital Medical Center
Department
Center for Autoimmune Genomics and Etiology (CAGE)
Street address
3333 Burnet Avenue
City
Cincinnati
State/province
Ohio
ZIP/Postal code
45229-3026
Country
USA
Platforms (1)
GPL17878
NimbleGen Mouse MM9 Deluxe Promoter Array (100718_MM9_Promoter_MeDIP_HX1)
Samples (26)
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GSM1726401
DAM_1_vs_DPNII
GSM1726402
DAM_2_vs_DPNII
GSM1726403
DAM_3_vs_DPNII
GSM1726404
N1-D/RBP-AM-Ert2_1_vs_DPNII
GSM1726405
N1-D/RBP-AM-Ert2_2_vs_DPNII
GSM1726406
N1-D/RBP-AM-Ert2_3_vs_DPNII
GSM1726407
N1Dram-D/RBP-AM-Ert2+Dox_1_vs_DPNII
GSM1726408
N1Dram-D/RBP-AM-Ert2+Dox_2_vs_DPNII
GSM1726409
N1Dram-D/RBP-AM-Ert2+Dox_3_vs_DPNII
GSM1726410
N1-D/RBP-AM-Ert2+Dox_1_vs_DPNII
GSM1726411
N1-D/RBP-AM-Ert2+Dox_2_vs_DPNII
GSM1726412
N1-D/RBP-AM-Ert2+Dox_3_vs_DPNII
GSM1726413
N1-D/MAML-AM-Ert2_1_vs_DPNII
GSM1726414
N1-D/MAML-AM-Ert2_2_vs_DPNII
GSM1726415
N1-D/MAML-AM-Ert2_3_vs_DPNII
GSM1726416
N1-D/p300-AM-Ert2_1_vs_DPNII
GSM1726417
N1-D/p300-AM-Ert2_2_vs_DPNII
GSM1726418
N1-D/p300-AM-Ert2_3_vs_DPNII
GSM1726419
N1-D/N1-AM-Ert2_1_vs_DPNII
GSM1726420
N1-D/N1-AM-Ert2_2_vs_DPNII
GSM1726421
Mef2c-D/MAML-AM-Ert2_1_vs_DPNII
GSM1726422
Mef2c-D/MAML-AM-Ert2_2_vs_DPNII
GSM1726423
Mef2c-D/MAML-AM-Ert2_3_vs_DPNII
GSM1726424
Mef2c-D/p300-AM-Ert2_1_vs_DPNII
GSM1726425
Mef2c-D/p300-AM-Ert2_2_vs_DPNII
GSM1726426
Mef2c-D/p300-AM-Ert2_3_vs_DPNII
This SubSeries is part of SuperSeries:
GSE70402
SpDamID: Marking DNA Bound by Protein Complexes Identifies Notch-Dimer Responsive Enhancers
Relations
BioProject
PRJNA288532
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE70388_RAW.tar
2.2 Gb
(http)
(custom)
TAR (of PAIR)
GSE70388_fc_Mef2c-D_MAML-AM.bed.gz
458.2 Kb
(ftp)
(http)
BED
GSE70388_fc_Mef2c-D_p300-AM-Ert.bed.gz
1.0 Mb
(ftp)
(http)
BED
GSE70388_fc_N1-D_MAML-AM.bed.gz
578.2 Kb
(ftp)
(http)
BED
GSE70388_fc_N1-D_N1-AM-Ert2.bed.gz
770.4 Kb
(ftp)
(http)
BED
GSE70388_fc_N1-D_Rbp-AM-Ert2.bed.gz
205.9 Kb
(ftp)
(http)
BED
GSE70388_fc_N1-D_Rbp-AM-Ert2_Dox.bed.gz
195.7 Kb
(ftp)
(http)
BED
GSE70388_fc_N1-D_p300-AM-Ert.bed.gz
599.3 Kb
(ftp)
(http)
BED
GSE70388_fc_N1dRam-D_Rbp-AM-Ert2_Dox.bed.gz
165.9 Kb
(ftp)
(http)
BED
Processed data are available on Series record
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