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Series GSE7147 Query DataSets for GSE7147
Status Public on Aug 01, 2007
Title Analysis of Gene Expression Under Nitrogen Fixing Conditions in Geobacter sulfurreducens
Organism Geobacter sulfurreducens
Experiment type Expression profiling by array
Summary In this study, expression analysis using electrochemically synthesized Combimatrix 12K DNA microarrays was validated in G sulfurreducens. Growth under nitrogen fixing conditions and growth in ammonium amended medium, respectively, were the experimental and control conditions. Expression analysis using this platform was also compared to expression analysis on whole cDNA microarrays.
Keywords: two-condition comparison
 
Overall design This was a dual channel experiment used aRNA directly labeled with either cy5 (experimental) or cy3 (control). Three biological replicates were labeled and hybridized in duplicate (two technical replicates).
 
Contributor(s) Postier BL, DiDonato jr. RJ, Lovley DR, Methe BA
Citation(s) 17720265
Submission date Feb 27, 2007
Last update date Mar 16, 2012
Contact name Derek Lovley
Organization name University of Massachusetts Amherst
Department Microbiology
Lab D. R. Lovley
Street address University of Massachusetts at Amherst, Dept. of Microbiology, Morrill IV north room 202
City Amherst
State/province MA
ZIP/Postal code 01003
Country USA
 
Platforms (1)
GPL4895 Geobacter sulfurreducens antisense-detecting 12K oligo array
Samples (6)
GSM172164 Geobacter sulfurreducens N2 fixation vs ammonium-amended BR1A
GSM172168 Geobacter sulfurreducens N2 fixation vs ammonium-amended BR2A
GSM172169 Geobacter sulfurreducens N2 fixation vs ammonium-amended BR3A
Relations
BioProject PRJNA98189

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE7147_RAW.tar 8.3 Mb (http)(custom) TAR (of GPR)

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