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| Status |
Public on Dec 19, 2016 |
| Title |
Functional Subclone Profiling for Prediction of Treatment-Induced Intratumor Population Shifts and Discovery of Rational Drug Combinations in Human Glioblastoma [SNP] |
| Organism |
Homo sapiens |
| Experiment type |
Genome variation profiling by SNP array
SNP genotyping by SNP array
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| Summary |
Purpose: Investigation of clonal heterogeneity may be key to understanding mechanisms of therapeutic failure in human cancer. However, little is known on the consequences of therapeutic intervention on the clonal composition of solid tumors.
Experimental Design: Here, we used 33 single cell–derived subclones generated from five clinical glioblastoma specimens for exploring intra- and interindividual spectra of drug resistance profiles in vitro. In a personalized setting, we explored whether differences in pharmacologic sensitivity among subclones could be employed to predict drug-dependent changes to the clonal composition of tumors.
Results: Subclones from individual tumors exhibited a remarkable heterogeneity of drug resistance to a library of potential antiglioblastoma compounds. A more comprehensive intratumoral analysis revealed that stable genetic and phenotypic characteristics of coexisting subclones could be correlated with distinct drug sensitivity profiles. The data obtained from differential drug response analysis could be employed to predict clonal population shifts within the naïve parental tumor in vitro and in orthotopic xenografts. Furthermore, the value of pharmacologic profiles could be shown for establishing rational strategies for individualized secondary lines of treatment.
Conclusions: Our data provide a previously unrecognized strategy for revealing functional consequences of intratumor heterogeneity by enabling predictive modeling of treatment-related subclone dynamics in human glioblastoma
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| Overall design |
SNP profiling of 7 cultured glioblastoma-samples from one surgical specimen. 5 subclones (GNV019_CL1/2/3/6/7) were derived from a parental culture (GNV019; in an early (3) and late (10) passage).
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| Contributor(s) |
Reinartz R, Scheffler B |
| Citation(s) |
27521447 |
| |
| Submission date |
Sep 04, 2015 |
| Last update date |
Dec 21, 2016 |
| Contact name |
Roman Reinartz |
| E-mail(s) |
roman.reinartz@uni-bonn.de
|
| Organization name |
University of Bonn
|
| Department |
Institute of Reconstructive Neurobiology
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| Lab |
Stem Cell Pathologies Group
|
| Street address |
Sigmund Freud Strasse 25
|
| City |
Bonn |
| ZIP/Postal code |
53127 |
| Country |
Germany |
| |
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| Platforms (2) |
| GPL8887 |
Illumina Human610-Quad v1.0 BeadChip |
| GPL20886 |
Illumina HumanHap550-Duov3 Genotyping BeadChip (HumanHap550-2v3_B; Name version) |
|
| Samples (7)
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| Relations |
| BioProject |
PRJNA294783 |
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