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Status |
Public on Feb 01, 2016 |
Title |
A zebrafish melanoma model reveals emergence of neural crest identity during melanoma initiation [zebrafish ChIP-seq] |
Organism |
Danio rerio |
Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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Summary |
We report the distribution of H3K27Ac histone marks in a zebrafish melanoma cell line and a zebrafish primary melanoma tumor with the aim of identifying super-enhancer regions and regions of interest. We also report sox10 ChIP-Seq on the same zebrafish melanoma cell line.
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Overall design |
Examination of H3K27Ac chromatin marks and sox10 binding in one zebrafish melanoma cell line. Examination of H3K27Ac chromatin marks in one freshly isolated zebrafish primary melanoma tumor.
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Contributor(s) |
Kaufman CK, Yang S, Zon L |
Citation(s) |
26823433 |
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Submission date |
Nov 24, 2015 |
Last update date |
May 15, 2019 |
Contact name |
Leonard Zon |
E-mail(s) |
zon@enders.tch.harvard.edu
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Organization name |
Boston Children's Hospital
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Department |
Oncology/Hematology
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Street address |
1 Blackfan Circle
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City |
Boston |
State/province |
MA |
ZIP/Postal code |
02115 |
Country |
USA |
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Platforms (1) |
GPL18413 |
Illumina HiSeq 2500 (Danio rerio) |
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Samples (6)
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This SubSeries is part of SuperSeries: |
GSE75356 |
A zebrafish melanoma model reveals emergence of neural crest identity during melanoma initiation |
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Relations |
BioProject |
PRJNA304003 |
SRA |
SRP066620 |