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Series GSE7580 Query DataSets for GSE7580
Status Public on May 09, 2007
Title Epigenetic natural variation in Arabidopsis thaliana
Organism Arabidopsis thaliana
Experiment type Genome variation profiling by genome tiling array
Methylation profiling by array
Summary Ecotype-specific differences in genome methylation were assayed in Arabidopsis Col and Ler variations using genomic tiling microarrays. Comparative genome hybridization was also performed so that the contribution of ecotype-specific amplifications and deletions could be estimated and integrated into the analysis of differential DNA methylation.
Keywords: methylation analysis and comparative genome hybridization
Overall design Methylation analysis of the two ecotypes as well as the CGH was performed in independent experiments consisting of 3 replicated dye reversal experiments each for a total of 6 measurements per probe per experiment.
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Contributor(s) Vaughn MW, Tanurdzic MB, Lippman ZB, Jiang H, Carasquillo R, Rabinowicz PD, Dedhia N, McCombie WR, Agier N, Bulski A, Colot V, Doerge RW, Martienssen RA
Citation(s) 17579518
Submission date Apr 23, 2007
Last update date Mar 17, 2012
Contact name Matthew Wayne Vaughn
Phone (512) 232-7124
Organization name University of Texas at Austin
Department Texas Advanced Computing Center
Lab Vaughn
Street address 10100 Burnet Rd
City Austin
State/province TX
ZIP/Postal code 78758
Country USA
Platforms (1)
GPL5116 CSHL Arabidopsis thaliana (ecotype Columbia) Chromosome 4 Genomic Tiling Array
Samples (3)
GSM183556 DNA cytosine methylation of Arabidopsis ec. Col-0 chromosome 4
GSM183557 DNA cytosine methylation of Arabidopsis ec. Ler chromosome 4
GSM183558 Comparative Genome Hybridization of Arabidopsis Col and Ler ecotypes
BioProject PRJNA100323

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