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Series GSE76906 Query DataSets for GSE76906
Status Public on Jan 01, 2017
Title Tissue-specific signatures in the transcriptional response to Anaplasma phagocytophilum infection of Ixodes scapularis and Ixodes ricinus tick cell lines
Organism Ixodes ricinus
Experiment type Expression profiling by high throughput sequencing
Summary We report differential gene expression with tissue-specific signatures in tick cell lines infected with Anaplasma phagocytophilum - transcriptional response to infection of I. scapularis ISE6 cells resembled that of tick hemocytes while the response in I. ricinus IRE/CTVM20 cells resembles that of tick midguts.
Overall design Comparison of differential gene expression in infected tick cell lines (Ixodes scapularis [ISE6] and Ixodes ricinus [IRE/CTVM20]) at 7 days post-infection. Differential gene expression determined through comparison with mock-treated (uninfected) cells. This series contains only Ixodes ricinus data.
Contributor(s) de la Fuente J, Ellis RJ
Citation(s) 28202075
Submission date Jan 15, 2016
Last update date May 15, 2019
Contact name Richard Ellis
Organization name Animal and Plant Health Agency
Street address APHA Weybridge
City Addlestone
ZIP/Postal code KT15 3NB
Country United Kingdom
Platforms (1)
GPL21340 Illumina Genome Analyzer IIx (Ixodes ricinus)
Samples (4)
GSM2040464 Tick01
GSM2040465 Tick02
GSM2040466 Tick15
BioProject PRJNA308910
SRA SRP068499

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE76906_RAW.tar 2.1 Mb (http)(custom) TAR (of FPKM_TRACKING)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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