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Series GSE77077 Query DataSets for GSE77077
Status Public on Apr 05, 2016
Title Control of progenitor cell positioning and organ patterning during embryogenesis
Organism Danio rerio
Experiment type Expression profiling by high throughput sequencing
Summary The precise positioning of organ progenitor cells constitutes an essential, yet poorly understood step in organ development and function. Using primordial germ cells and the process of gonadogenesis as an in vivo model, we present the developmental mechanisms facilitating the maintenance of a motile progenitor cell population at the site where the organ develops. We find that the action of repulsive cues coupled with the generation of physical barriers confine the cells to the correct bilateral positions within the embryo. Using computer particle-based simulations we could also demonstrate the role of reflecting barriers, from which cells turn away upon contact, and the importance of proper level of cell-cell interaction for maintaining the tight cell clusters and their correct positioning at the target region. The cellular mechanisms operating during those events were determined using high-resolution live imaging microscopy. This analysis revealed cell polarity change upon interaction with the physical barrier and the establishment of compact clusters that involves increased cell-cell interaction as a result of collapse of cell protrusions and enhanced adhesion. The combination of these developmental and cellular
 
Overall design RNA profiling in zebrafish embryos of 7 hpf and 36 hpf in sorted germ cells and randomly sorted somatic cells
 
Contributor(s) Tarbashevich K, Raz E
Citation(s) 27088892
Submission date Jan 21, 2016
Last update date May 15, 2019
Contact name Katsiaryna Tarbashevich
E-mail(s) k.tarbashevich@uni-muenster.de
Phone +4917620089474
Organization name Institute for Cell Biology
Street address Von-Esmarch Str 56
City Muesnter
ZIP/Postal code 48149
Country Germany
 
Platforms (1)
GPL9319 Illumina Genome Analyzer II (Danio rerio)
Samples (4)
GSM2043503 7hpf PGC
GSM2043504 7hpf soma
GSM2043505 36hpf PGC
Relations
BioProject PRJNA309466
SRA SRP068774

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE77077_HT_data_36hpf.xls.gz 1.3 Mb (ftp)(http) XLS
GSE77077_HT_data_7hpf.xls.gz 1.1 Mb (ftp)(http) XLS
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Raw data are available in SRA
Processed data are available on Series record

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