NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE77430 Query DataSets for GSE77430
Status Public on Oct 02, 2017
Title Alterations in the hepatic epigenome in mice exposed to a maternal high fat diet in utero [HELP]
Organism Mus musculus
Experiment type Methylation profiling by genome tiling array
Summary Exposure to a high fat (HF) diet in utero is associated with increased incidence of cardiovascular disease, diabetes and metabolic syndrome later in life. However, the molecular basis of this enhanced susceptibility for metabolic disease is poorly understood. We performed genome-wide DNA methylation analysis to examine DNA methylation patterns in liver of offspring exposed to a Control or HF maternal diet. WT mice were fed a C (9.5% fat, 3.59 kcal/g) or HF (35.5% fat, 5.29 kcal/g) diet for 2 wk before mating, throughout pregnancy and lactation. Offspring were weaned to a low fat (5.6% fat, 3.4 kcal/g) diet and were sacrificed at 5wks of age. DNA methylation analysis revealed the majority of differentially methylated regions were hypermethylated in HF liver. Chromosomal distribution analysis showed hypermethylation hot spots on chromosomes 4 (atherosclerosis susceptibility QTL1) and 18 (insulin dependent susceptibility 21). Most of the hypermethylated genes in these hot spots are associated with cardiovascular system development and function.
In summary, exposure to a maternal HF diet significantly alters the DNA methylation patterns in the liver of exposed offspring and contributes to programmed development of metabolic disease later in life.
 
Overall design High molecular weight genomic DNA was extracted from liver in mouse exposure to a control or high fat (HF) diet in utero (n=3 each group). Genome wide methylation analysis was performed using HELP assay.
 
Contributor(s) Charron MJ, Seki Y, Suzuki M
Citation(s) 28911167
Submission date Feb 01, 2016
Last update date Oct 04, 2017
Contact name Maureen J Charron
Organization name Albert Einstein College of Medicine
Department Biochemistry
Street address 1300 Morris Park Ave
City Bronx
State/province NY
ZIP/Postal code 10461
Country USA
 
Platforms (1)
GPL21388 AE_Mouse_HD2_HELP array
Samples (6)
GSM2051747 Control1
GSM2051748 Control2
GSM2051749 Control3
This SubSeries is part of SuperSeries:
GSE77432 Alterations in the hepatic epigenome in mice exposed to a maternal high fat diet in utero
Relations
BioProject PRJNA310334

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE77430_RAW.tar 767.1 Mb (http)(custom) TAR (of TXT, WIG)
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap