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GEO accession:
Series GSE77634
Query DataSets for GSE77634
Status
Public on Mar 28, 2016
Title
Enhanced CLIP (eCLIP) enables robust and scalable transcriptome-wide discovery and characterization of RNA binding protein binding sites
Organism
Homo sapiens
Experiment type
Expression profiling by array
Expression profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
27018577
Submission date
Feb 05, 2016
Last update date
May 15, 2019
Contact name
Gene Yeo
E-mail(s)
geneyeo@ucsd.edu
Organization name
UCSD
Street address
2880 Torrey Pines Scenic Dr. Room 3805/Yeo Lab
City
La Jolla
State/province
CA
ZIP/Postal code
92037
Country
USA
Platforms (2)
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
GPL17585
[HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [probe set (exon) version]
Samples (100)
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GSM2049426
Non-target control Rep1
GSM2049427
Non-target control Rep2
GSM2049428
Non-target control Rep3
GSM2049429
RBFOX2 knockdown shRNA1 Rep1
GSM2049430
RBFOX2 knockdown shRNA1 Rep2
GSM2049431
RBFOX2 knockdown shRNA1 Rep3
GSM2049432
RBFOX2 knockdown shRNA2 Rep1
GSM2049433
RBFOX2 knockdown shRNA2 Rep2
GSM2049434
RBFOX2 knockdown shRNA2 Rep3
GSM2049435
RBFOX2 knockdown shRNA3 Rep1
GSM2049436
RBFOX2 knockdown shRNA3 Rep2
GSM2049437
RBFOX2 knockdown shRNA3 Rep3
GSM2055432
RBFOX2 293T Rep1
GSM2055433
RBFOX2 293T Rep1 Input
GSM2055434
RBFOX2 293T Rep2
GSM2055435
RBFOX2 293T Rep2 Input
GSM2055436
IgG 293T Rep1
GSM2055437
IgG 293T Rep1 Input
GSM2055438
SLBP 293T Rep1
GSM2055439
SLBP 293T Rep1 Input
GSM2055440
SLBP 293T Rep2
GSM2055441
SLBP 293T Rep2 Input
GSM2055442
SLBP 293T Rep3
GSM2055443
SLBP 293T Rep3 Input
GSM2055444
SLBP 293T Rep4
GSM2055445
SLBP 293T Rep4 Input
GSM2055446
RBFOX2 Shearing 293T Condition0U
GSM2055447
RBFOX2 Shearing 293T Condition5U Rep1
GSM2055448
RBFOX2 Shearing 293T Condition40U Rep1
GSM2055449
RBFOX2 Shearing 293T Condition400U
GSM2055450
RBFOX2 Shearing 293T Condition2000U
GSM2055451
RBFOX2 Shearing 293T Condition5U Rep2
GSM2055452
RBFOX2 Shearing 293T Condition10U
GSM2055453
RBFOX2 Shearing 293T Condition20U
GSM2055454
RBFOX2 Shearing 293T Condition40U Rep2
GSM2055455
RBFOX2 Shearing 293T Condition80U
GSM2055496
RBFOX2 iCLIP Rep1
GSM2111505
ENCLB134VGD
GSM2111506
ENCLB097KHV
GSM2111507
ENCSR044NGV
GSM2111508
ENCLB909IOJ
GSM2111509
ENCLB026DPK
GSM2111510
ENCSR298SAD
GSM2111511
ENCLB155HIP
GSM2111512
ENCLB676CIS
GSM2111513
ENCSR188OHK
GSM2111514
ENCLB156RWL
GSM2111515
ENCLB080PWY
GSM2111516
ENCSR585TQT
GSM2111517
ENCLB689GWR
GSM2111518
ENCLB959KMS
GSM2111519
ENCSR067UKU
GSM2111520
ENCLB175BHT
GSM2111521
ENCLB650JTP
GSM2111522
ENCSR439GXW
GSM2111523
ENCLB850EER
GSM2111524
ENCLB288CKF
GSM2111525
ENCSR393STP
GSM2111526
ENCLB263TUG
GSM2111527
ENCLB541BNB
GSM2111528
ENCSR595PFU
GSM2111529
ENCLB550OFF
GSM2111530
ENCLB152QMP
GSM2111531
ENCSR575DKE
GSM2111532
ENCLB235NQC
GSM2111533
ENCLB022FVI
GSM2111534
ENCSR461LGW
GSM2111535
ENCLB423YJJ
GSM2111536
ENCLB419TPX
GSM2111537
ENCSR615AAW
GSM2111538
ENCLB004PMM
GSM2111539
ENCLB278TOU
GSM2111540
ENCSR257OYO
GSM2111541
ENCLB238JYQ
GSM2111542
ENCLB436FYS
GSM2111543
ENCSR130TOJ
GSM2111544
ENCLB472AWB
GSM2111545
ENCLB874IKE
GSM2111546
ENCSR687HHB
GSM2111547
ENCLB778RFV
GSM2111548
ENCLB893EAL
GSM2111549
ENCSR828NSY
GSM2111550
ENCLB123NMA
GSM2111551
ENCLB195YGJ
GSM2111552
ENCSR129SCO
GSM2111553
ENCLB933GRD
GSM2111554
ENCLB436IZW
GSM2111555
ENCSR090VXV
GSM2111556
ENCLB371PGL
GSM2111557
ENCLB019FNY
GSM2111558
ENCSR775UPS
GSM2111559
ENCLB238HOU
GSM2111560
ENCLB483UDN
GSM2111561
ENCSR445LJH
GSM2111562
ENCLB203AIU
GSM2111563
ENCLB354LPS
GSM2111564
ENCSR496UBM
GSM2111565
ENCLB679DRC
GSM2111566
ENCLB612WYL
GSM2111567
ENCSR736LKF
This SuperSeries is composed of the following SubSeries:
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More...
GSE77339
Enhanced CLIP (eCLIP) enables robust and scalable transcriptome-wide discovery and characterization of RNA binding protein binding sites [array]
GSE77629
Enhanced CLIP (eCLIP) enables robust and scalable transcriptome-wide discovery and characterization of RNA binding protein binding sites [eCLIP - 293T cells]
GSE77633
Enhanced CLIP (eCLIP) enables robust and scalable transcriptome-wide discovery and characterization of RNA binding protein binding sites [iCLIP]
GSE80039
Enhanced CLIP (eCLIP) enables robust and scalable transcriptome-wide discovery and characterization of RNA binding protein binding sites [eCLIP - HepG2/K562 cells]
Relations
BioProject
PRJNA311057
Download family
Format
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Size
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File type/resource
GSE77634_RAW.tar
3.6 Gb
(http)
(custom)
TAR (of BB, BED, BW, CEL)
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