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Series GSE77731 Query DataSets for GSE77731
Status Public on May 17, 2016
Title Profiling of epigenetic and transcriptomic landscapes in normal mouse liver, phenobarbital exposed mouse livers and mouse liver tumours
Organism Mus musculus
Experiment type Methylation profiling by genome tiling array
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 27197233
Submission date Feb 09, 2016
Last update date Dec 12, 2019
Contact name John Paterson Thomson
E-mail(s) john.thomson@igmm.ed.ac.uk
Organization name University of Edinburgh
Department MRC Human Genetics Unit
Lab Meehan
Street address Crewe Road
City Edinburgh
ZIP/Postal code EH4 2XU
Country United Kingdom
 
Platforms (6)
GPL14890 NimbleGen Mouse 2.1M deluxe promoter array [100205_MM9_Promoter_MeDIP_HX1]
GPL16413 NimbleGen Mouse Meth 2.1M Deluxe Promoter Array Ver. 2 [100929_MM9_Deluxe_Prom_Meth_HX1]
GPL16743 Agilent-028383 SurePrint G3 Mouse Promoter Microarray 1x1M
Samples (39)
GSM2057933 control mouse 1 5mC profile
GSM2057934 control mouse 2 5mC profile
GSM2057935 NASH driven tumour mouse 1 5mC profile
This SuperSeries is composed of the following SubSeries:
GSE77725 IP of 5-methylcytosine (5-mc) enriched DNA fragments from control and mice with non-acoholic steatohepatitis (NASH) related hepatocellular carcinoma (HCC)
GSE77726 IP of 5-hydroxymethylcytosine (5-hmC) enriched DNA fragments from control ,PB treated mouse livers , resulting Ctnnb1 mutated PB liver tumours and PB minus Ha-Ras mutate liver tumour
GSE77727 IP of 5-methylcytosine (5-mc) enriched DNA fragments from control, PB treated mouse livers, resulting Ctnnb1 mutated PB liver tumours and PB minus Ha-Ras mutate liver tumour
Relations
BioProject PRJNA311317

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE77731_RAW.tar 4.1 Gb (http)(custom) TAR (of PAIR, TXT, WIG)
SRA Run SelectorHelp
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