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Series GSE78586 Query DataSets for GSE78586
Status Public on Mar 18, 2016
Title polyA mRNA RNA-seq from mammary epithelial cell (ENCSR000COX)
Project ENCODE
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The libraries contained in this experiment come from mammary gland epithelial primary whole cells, HMEC isolated from independent donors. They are stranded PE76 Illumina GAIIx RNA-Seq libraries from rRNA-depleted Poly-A+ > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR000COX/
 
Citation(s) 22955616
BioProject PRJNA30709
Submission date Feb 25, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL10999 Illumina Genome Analyzer IIx (Homo sapiens)
Samples (1)
GSM2072420 polyA mRNA RNA-seq from mammary epithelial cell (ENCLB555AWZ)
Relations
Supersedes GSM758571

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE78586_ENCFF000GCU_contigs_hg19.bigBed 13.6 Mb (ftp)(http) BIGBED
GSE78586_ENCFF000GCV_exon_quantifications_hg19.gtf.gz 4.9 Mb (ftp)(http) GTF
GSE78586_ENCFF000GCX_exon_quantifications_hg19.gtf.gz 16.3 Mb (ftp)(http) GTF
GSE78586_ENCFF000GDB_gene_quantifications_hg19.gtf.gz 619.5 Kb (ftp)(http) GTF
GSE78586_ENCFF000GDD_gene_quantifications_hg19.gtf.gz 582.7 Kb (ftp)(http) GTF
GSE78586_ENCFF000GDF_gene_quantifications_hg19.gtf.gz 1.8 Mb (ftp)(http) GTF
GSE78586_ENCFF000GDH_splice_junctions_hg19.bigBed 7.2 Mb (ftp)(http) BIGBED
GSE78586_ENCFF000GDN_transcript_quantifications_hg19.gtf.gz 8.2 Mb (ftp)(http) GTF
GSE78586_ENCFF000GDP_transcript_quantifications_hg19.gtf.gz 923.6 Kb (ftp)(http) GTF
GSE78586_ENCFF000GDR_transcript_quantifications_hg19.gtf.gz 4.3 Mb (ftp)(http) GTF
GSE78586_ENCFF070ILM_contigs_hg19.bed.gz 10.4 Mb (ftp)(http) BED
GSE78586_ENCFF903QST_splice_junctions_hg19.bed.gz 5.7 Mb (ftp)(http) BED
GSE78586_RAW.tar 1.5 Gb (http)(custom) TAR (of BIGWIG, TSV, TXT)
SRA Run SelectorHelp
Raw data provided as supplementary file
Processed data provided as supplementary file
Processed data are available on Series record

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