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Series GSE78596 Query DataSets for GSE78596
Status Public on Mar 18, 2016
Title polyA depleted RNA-seq from mammary epithelial cell (ENCSR000CPU)
Project ENCODE
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The libraries contained in this experiment come from mammary gland epithelial primary whole cells, HMEC isolated from independent donors. They are stranded PE76 Illumina GAIIx RNA-Seq libraries from rRNA-depleted and DNS normalized Poly-A- RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to and
Overall design
Citation(s) 22955616
BioProject PRJNA30709
Submission date Feb 25, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platforms (1)
GPL10999 Illumina Genome Analyzer IIx (Homo sapiens)
Samples (1)
GSM2072441 polyA depleted RNA-seq from mammary epithelial cell (ENCLB555APX)
Supersedes GSM765397

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE78596_ENCFF000GBZ_contigs_hg19.bigBed 10.6 Mb (ftp)(http) BIGBED
GSE78596_ENCFF000GCA_exon_quantifications_hg19.gtf.gz 1012.5 Kb (ftp)(http) GTF
GSE78596_ENCFF000GCC_exon_quantifications_hg19.gtf.gz 15.0 Mb (ftp)(http) GTF
GSE78596_ENCFF000GCE_gene_quantifications_hg19.gtf.gz 164.7 Kb (ftp)(http) GTF
GSE78596_ENCFF000GCG_gene_quantifications_hg19.gtf.gz 207.4 Kb (ftp)(http) GTF
GSE78596_ENCFF000GCI_gene_quantifications_hg19.gtf.gz 1.7 Mb (ftp)(http) GTF
GSE78596_ENCFF000GCK_splice_junctions_hg19.bigBed 2.3 Mb (ftp)(http) BIGBED
GSE78596_ENCFF000GCN_transcript_quantifications_hg19.gtf.gz 906.8 Kb (ftp)(http) GTF
GSE78596_ENCFF000GCP_transcript_quantifications_hg19.gtf.gz 264.3 Kb (ftp)(http) GTF
GSE78596_ENCFF000GCR_transcript_quantifications_hg19.gtf.gz 3.8 Mb (ftp)(http) GTF
GSE78596_ENCFF069LFJ_contigs_hg19.bed.gz 6.3 Mb (ftp)(http) BED
GSE78596_ENCFF670XFY_splice_junctions_hg19.bed.gz 1.7 Mb (ftp)(http) BED
GSE78596_RAW.tar 184.4 Mb (http)(custom) TAR (of BIGWIG, TSV, TXT)
SRA Run SelectorHelp
Raw data provided as supplementary file
Processed data provided as supplementary file
Processed data are available on Series record

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