NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE78611 Query DataSets for GSE78611
Status Public on Mar 18, 2016
Title total RNA-seq from skeletal muscle satellite cell (ENCSR000CUI)
Project ENCODE
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The libraries contained in this experiment come from skeletal muscle myosatellite cells isolated from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR000CUI/
 
Citation(s) 22955616
BioProject PRJNA30709
Submission date Feb 25, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (2)
GSM2072468 total RNA-seq from skeletal muscle satellite cell (ENCLB555ATT)
GSM2072469 total RNA-seq from skeletal muscle satellite cell (ENCLB555APQ)
Relations
Supersedes GSM984615

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE78611_ENCFF000IKS_contigs_hg19.bigBed 46.4 Mb (ftp)(http) BIGBED
GSE78611_ENCFF000IKT_exon_quantifications_hg19.gtf.gz 22.6 Mb (ftp)(http) GTF
GSE78611_ENCFF000IKV_exon_quantifications_hg19.gtf.gz 19.3 Mb (ftp)(http) GTF
GSE78611_ENCFF000IKX_gene_quantifications_hg19.gtf.gz 9.0 Mb (ftp)(http) GTF
GSE78611_ENCFF000IKZ_gene_quantifications_hg19.gtf.gz 1.8 Mb (ftp)(http) GTF
GSE78611_ENCFF000ILB_splice_junctions_hg19.bigBed 12.0 Mb (ftp)(http) BIGBED
GSE78611_ENCFF000ILF_transcript_quantifications_hg19.gtf.gz 9.9 Mb (ftp)(http) GTF
GSE78611_ENCFF000ILI_transcript_quantifications_hg19.gtf.gz 4.8 Mb (ftp)(http) GTF
GSE78611_ENCFF646PPO_splice_junctions_hg19.bed.gz 11.8 Mb (ftp)(http) BED
GSE78611_ENCFF805NAM_contigs_hg19.bed.gz 33.0 Mb (ftp)(http) BED
GSE78611_RAW.tar 3.0 Gb (http)(custom) TAR (of BIGWIG, TSV, TXT)
SRA Run SelectorHelp
Raw data provided as supplementary file
Processed data provided as supplementary file
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap