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Series GSE78613 Query DataSets for GSE78613
Status Public on Mar 18, 2016
Title total RNA-seq from thoracic aorta endothelial cell (ENCSR000CUK)
Project ENCODE
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The libraries contained in this experiment come from aortic endothelial primary whole cells, HAoEC isolated from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to and
Overall design
Citation(s) 22955616
BioProject PRJNA30709
Submission date Feb 25, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (2)
GSM2072472 total RNA-seq from thoracic aorta endothelial cell (ENCLB555AQY)
GSM2072473 total RNA-seq from thoracic aorta endothelial cell (ENCLB555ALD)
Supersedes GSM984618

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE78613_ENCFF000FKL_contigs_hg19.bigBed 32.7 Mb (ftp)(http) BIGBED
GSE78613_ENCFF000FKM_exon_quantifications_hg19.gtf.gz 20.2 Mb (ftp)(http) GTF
GSE78613_ENCFF000FKO_exon_quantifications_hg19.gtf.gz 19.7 Mb (ftp)(http) GTF
GSE78613_ENCFF000FKS_gene_quantifications_hg19.gtf.gz 6.0 Mb (ftp)(http) GTF
GSE78613_ENCFF000FKU_gene_quantifications_hg19.gtf.gz 1.8 Mb (ftp)(http) GTF
GSE78613_ENCFF000FKW_splice_junctions_hg19.bigBed 14.2 Mb (ftp)(http) BIGBED
GSE78613_ENCFF000FLD_transcript_quantifications_hg19.gtf.gz 6.6 Mb (ftp)(http) GTF
GSE78613_ENCFF000FLF_transcript_quantifications_hg19.gtf.gz 5.0 Mb (ftp)(http) GTF
GSE78613_ENCFF768UOF_splice_junctions_hg19.bed.gz 13.4 Mb (ftp)(http) BED
GSE78613_ENCFF888ALB_contigs_hg19.bed.gz 26.0 Mb (ftp)(http) BED
GSE78613_RAW.tar 8.3 Gb (http)(custom) TAR (of BIGWIG, TSV, TXT)
SRA Run SelectorHelp
Raw data provided as supplementary file
Processed data provided as supplementary file
Processed data are available on Series record

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