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Series GSE78616 Query DataSets for GSE78616
Status Public on Mar 18, 2016
Title total RNA-seq from mammary epithelial cell (ENCSR000CUN)
Project ENCODE
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The libraries contained in this experiment come from mammary epithelial primary whole cells, HMEpC. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to and
Overall design
Citation(s) 22955616
BioProject PRJNA30709
Submission date Feb 25, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (1)
GSM2072478 total RNA-seq from mammary epithelial cell (ENCLB555AOT)
Supersedes GSM984621

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE78616_ENCFF000GDU_contigs_hg19.bigBed 65.4 Mb (ftp)(http) BIGBED
GSE78616_ENCFF000GDV_exon_quantifications_hg19.gtf.gz 12.2 Mb (ftp)(http) GTF
GSE78616_ENCFF000GDY_exon_quantifications_hg19.gtf.gz 17.5 Mb (ftp)(http) GTF
GSE78616_ENCFF000GEA_gene_quantifications_hg19.gtf.gz 3.3 Mb (ftp)(http) GTF
GSE78616_ENCFF000GEC_gene_quantifications_hg19.gtf.gz 1.6 Mb (ftp)(http) GTF
GSE78616_ENCFF000GEE_splice_junctions_hg19.bigBed 7.7 Mb (ftp)(http) BIGBED
GSE78616_ENCFF000GEJ_transcript_quantifications_hg19.gtf.gz 4.0 Mb (ftp)(http) GTF
GSE78616_ENCFF000GEL_transcript_quantifications_hg19.gtf.gz 4.3 Mb (ftp)(http) GTF
GSE78616_ENCFF493PMS_splice_junctions_hg19.bed.gz 6.6 Mb (ftp)(http) BED
GSE78616_ENCFF632CTB_contigs_hg19.bed.gz 52.4 Mb (ftp)(http) BED
GSE78616_RAW.tar 2.9 Gb (http)(custom) TAR (of BIGWIG, TSV, TXT)
SRA Run SelectorHelp
Raw data provided as supplementary file
Processed data provided as supplementary file
Processed data are available on Series record

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