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Series GSE79640 Query DataSets for GSE79640
Status Public on Oct 13, 2016
Title Loss of CREBBP results in H3K27ac loss at enhancers in mouse lymphoma cells
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary KD of Crebbp at mouse cells results in reduced H3K27ac enrichment at a subset of promoters and enhancers.
 
Overall design Genome-wide H3K27Ac ChIPseq binding sites in mouse cells with shCrebbp and scramble control.
 
Contributor(s) Jiang Y, Geng H, Melnick A
Citation(s) 27733359
Submission date Mar 28, 2016
Last update date May 15, 2019
Contact name Huimin Geng
E-mail(s) huimin.geng@ucsf.edu
Organization name UCSF
Department Department of Laboratory Medicine
Street address 513 Parnassus Ave., MSB S-1480
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (20)
GSM2100303 Sample_167_1_Input
GSM2100304 Sample_167_1_K27Ac
GSM2100305 Sample_167_2_Input
This SubSeries is part of SuperSeries:
GSE79686 Loss of CREBBP results in H3K27Ac loss at enhancers and gene expression repression in lymphoma cells
Relations
BioProject PRJNA316576
SRA SRP072421

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE79640_RAW.tar 3.6 Gb (http)(custom) TAR (of BIGBED, BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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