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| Status |
Public on Apr 07, 2017 |
| Title |
Gene expression analysis (RNA-seq) of Arabidopsis thaliana roots in wild type and trm4b-1 mutants under control and oxidative stress conditions |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
To investigate why Arabidopsis trm4b mutants have short roots and increased sensitivity to oxidative stress, we investigated gene expression in wild type and trm4b-1 mutants under control and oxidative stress conditions
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| Overall design |
RNA-seq analysis was performed on wild type and trm4b-1 mutants under controlled conditions and under oxidative stress (0.01 uM paraquat). Three biological replicates were performed for each sample.
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| Contributor(s) |
David R, Burgess AL, Searle IR |
| Citation missing |
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| |
| Submission date |
Apr 07, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Alice Louise Burgess |
| E-mail(s) |
alice.burgess@adelaide.edu.au
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| Organization name |
University of Adelaide
|
| Department |
Genetics and Evolution
|
| Lab |
Iain Searle Laboratory
|
| Street address |
Frome road
|
| City |
Adelaide |
| State/province |
SA |
| ZIP/Postal code |
5005 |
| Country |
Australia |
| |
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| Platforms (1) |
| GPL13222 |
Illumina HiSeq 2000 (Arabidopsis thaliana) |
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| Samples (12)
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| This SubSeries is part of SuperSeries: |
| GSE80054 |
Transcriptome-wide RNA 5-methylcytosine methylation in siliques, shoots and roots and root gene expression profiling of Arabidopsis thaliana |
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| Relations |
| BioProject |
PRJNA317692 |
| SRA |
SRP073003 |
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