|
| Status |
Public on Aug 02, 2017 |
| Title |
Population Prehistory in Island Southeast Asia |
| Organism |
Homo sapiens |
| Experiment type |
SNP genotyping by SNP array
Genome variation profiling by SNP array
|
| Summary |
Affymetrix single nucleotide polymorphism (SNP) array data were collected to study genome-wide patterns of genomic variation across a broad geographical range of Island Southeast Asian populations. This region has experienced an extremely complex admixture history. Initially settled ~50,000 years ago, Island Southeast Asia has since been the recipient of multiple waves of population movements, most recently by Austronesian-speaking groups ultimately from Neolithic mainland Asia and later arrivals during the historic era from India and the Middle East. We have genotyped SNPs in ~500 individuals from 30 populations spanning this entire geographical region, from communities close to mainland Asia through to New Guinea. Particular attention has been paid to genomic data that are informative for population history, including the role of recent arrivals during the historic era and admixture with archaic hominins.
|
| |
|
| Overall design |
506 samples from 30 populations has been genotyped using the Affymetrix platform GPL18441
|
| |
|
| Contributor(s) |
Hammer MF, Lansing JS, Karafet TM, Cox MP, Sudoyo H, Savina OV |
| Citation(s) |
28957506 |
| |
| Submission date |
Apr 21, 2016 |
| Last update date |
Nov 01, 2017 |
| Contact name |
Tatiana M. Karafet |
| E-mail(s) |
tkarafet@email.arizona.edu
|
| Phone |
520-626-0404
|
| Organization name |
University of Arizona
|
| Department |
ARL
|
| Lab |
Michael Hammer's Research Group
|
| Street address |
BSW #246, 1041 E Lowell Str.
|
| City |
Tucson |
| State/province |
AZ |
| ZIP/Postal code |
85721 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL18441 |
[Axiom_GW_Hu_SNP] Affymetrix Axiom Genome-Wide CEU 1 Array Plate |
|
| Samples (506)
|
|
| Relations |
| BioProject |
PRJNA319208 |
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