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Series GSE80534 Query DataSets for GSE80534
Status Public on Aug 02, 2017
Title Population Prehistory in Island Southeast Asia
Organism Homo sapiens
Experiment type SNP genotyping by SNP array
Genome variation profiling by SNP array
Summary Affymetrix single nucleotide polymorphism (SNP) array data were collected to study genome-wide patterns of genomic variation across a broad geographical range of Island Southeast Asian populations. This region has experienced an extremely complex admixture history. Initially settled ~50,000 years ago, Island Southeast Asia has since been the recipient of multiple waves of population movements, most recently by Austronesian-speaking groups ultimately from Neolithic mainland Asia and later arrivals during the historic era from India and the Middle East. We have genotyped SNPs in ~500 individuals from 30 populations spanning this entire geographical region, from communities close to mainland Asia through to New Guinea. Particular attention has been paid to genomic data that are informative for population history, including the role of recent arrivals during the historic era and admixture with archaic hominins.
Overall design 506 samples from 30 populations has been genotyped using the Affymetrix platform GPL18441
Contributor(s) Hammer MF, Lansing JS, Karafet TM, Cox MP, Sudoyo H, Savina OV
Citation(s) 28957506
Submission date Apr 21, 2016
Last update date Nov 01, 2017
Contact name Tatiana M. Karafet
Phone 520-626-0404
Organization name University of Arizona
Department ARL
Lab Michael Hammer's Research Group
Street address BSW #246, 1041 E Lowell Str.
City Tucson
State/province AZ
ZIP/Postal code 85721
Country USA
Platforms (1)
GPL18441 [Axiom_GW_Hu_SNP] Affymetrix Axiom Genome-Wide CEU 1 Array Plate
Samples (506)
GSM2129880 Alor02
GSM2129881 Alor03
GSM2129882 Alor04
BioProject PRJNA319208

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE80534_INDONESIA_AUG2016.bed.gz 30.9 Mb (ftp)(http) BED
GSE80534_INDONESIA_AUG2016.bim.gz 4.9 Mb (ftp)(http) BIM
GSE80534_INDONESIA_AUG2016.fam.gz 2.5 Kb (ftp)(http) FAM
GSE80534_RAW.tar 7.5 Gb (http)(custom) TAR (of CEL, TXT)
Processed data provided as supplementary file
Processed data are available on Series record

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