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Series GSE80749 Query DataSets for GSE80749
Status Public on Apr 01, 2019
Title Transcript data affected by natural variation or PME17 mutation in Arabidopsis thaliana, infested or not with the aphid Myzus persicae
Organism Arabidopsis thaliana
Experiment type Expression profiling by array
Summary Investigation of the ecotype difference between Columbia-0 (Col) and Wassilewskija-0 (WS) on whole gene expression level, of PME17 mutation effect (compared to background WS) and of the aphid infestation effect on Col, WS and pme17 (infested plants compared to non-infested plants).
 
Overall design 12plex high density chips using total RNA extracted from three independent biological replicates and one or two technical replicates.
 
Contributor(s) Wattier C
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Submission date Apr 28, 2016
Last update date Apr 02, 2019
Contact name Christopher Wattier
Organization name Université de Picardie Jules Verne
Department Faculté des Sciences
Lab Centre de Ressources Régionales en Biologie Moléculaire
Street address 33 rue Saint Leu
City Amiens
State/province Somme
ZIP/Postal code 80000
Country France
 
Platforms (1)
GPL21786 NimbleGen Arabidopsis thaliana Gene Expression 12x135K Array [100718_Athal_TAIR9_exp; PROBE_ID]
Samples (30)
GSM2136469 WS-1
GSM2136470 WS-2
GSM2136471 WS-3
Relations
BioProject PRJNA319913

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE80749_RAW.tar 146.9 Mb (http)(custom) TAR (of PAIR)
Processed data included within Sample table
Processed data provided as supplementary file

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