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Series GSE80795 Query DataSets for GSE80795
Status Public on Feb 15, 2018
Title CpG island mediated linear and spatial gene partitioning (other data sets)
Sample organisms Homo sapiens; Mus musculus
Experiment type Third-party reanalysis
Methylation profiling by high throughput sequencing
Summary In order to elucidate the general rules for gene localization and regulation mediated by CpG islands, we reanalyzed diverse published data of DNaseI-seq, MeDIP-seq, LMNB1-DamID-seq, PolII ChIA-pet, and Hi-C analysis.
Overall design DNaseI-seq, MeDIP-seq, LMNB1-DamID-seq, PolII ChIA-pet, and Hi-C analysis
Contributor(s) Kim J, Beck S
Citation(s) 29529258
Submission date Apr 28, 2016
Last update date May 17, 2018
Contact name Jonghwan Kim
Phone 512-232-8046
Organization name University of Texas at Austin
Department Department of Molecular Cell and Developmental Biology, Institute for Cellular and Molecular Biology
Lab Kim Lab
Street address 2506 Speedway NMS 4.246
City Austin
State/province TX
ZIP/Postal code 78712
Country USA
This SubSeries is part of SuperSeries:
GSE80799 Implications of CpG islands on chromosomal architectures and modes of global gene regulation
Reanalysis of GSM1014154
Reanalysis of GSM1122838
Reanalysis of GSM1019697
Reanalysis of GSM1019693
Reanalysis of GSM970209
Reanalysis of GSM970210
Reanalysis of GSM970211
Reanalysis of GSM970213
Reanalysis of GSM862722
BioProject PRJNA319990

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE80795_GSM1014154_mESC_DNaseI_r1_peaks_filtered.bed.gz 1.3 Mb (ftp)(http) BED
GSE80795_GSM1014154_mESC_DNaseI_r2_peaks_filtered.bed.gz 1016.5 Kb (ftp)(http) BED
GSE80795_GSM1019693_3T3_LMNB1_r1..GSM1019691_DamCON_r1_peaks_filtered.bed.gz 3.2 Mb (ftp)(http) BED
GSE80795_GSM1019697_C2C12_LMNB1_r1..GSM1019695_DamCON_r1_peaks_filtered.bed.gz 5.0 Mb (ftp)(http) BED
GSE80795_GSM1122838_5mC_peaks_filtered.bed.gz 1.1 Mb (ftp)(http) BED
GSE80795_GSM862722_J1_mESC_NcoI_median_sorted.genecluster_inter-chrinteractionfrequency.txt.gz 894.2 Kb (ftp)(http) TXT
Processed data are available on Series record

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