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Series GSE81313 Query DataSets for GSE81313
Status Public on May 11, 2016
Title Identification of shared TCR sequences from T cells in human breast cancer using emulsion RT-PCR
Organism Homo sapiens
Experiment type Other
Summary We report the discovery of T cell receptors that are present and shared in multiple HLA-matched breast cancer patient tumors using a single cell emulsion based RT-PCR technique that pairs the alpha and beta TCR chains for high throughput analysis
Overall design Analysis of TCR sequences from 20 breast cancer patient tumors and blood, as well as 6 control HLA matched individuals
Contributor(s) Munson DJ, Egelston CA, Chiotti KE, Parra ZE, Bruno TC, Moore BL, Nakano TA, Simons DL, Jimenez G, Rozanov DV, Falta MT, Fontenot AP, Reynolds PR, Leach SM, Borges VF, Kappler JW, Spellman PT, Lee PP, Slansky JE
Citation(s) 27307436
Submission date May 11, 2016
Last update date Jan 25, 2019
Contact name Jill Slansky
Organization name Univ Colorado Som
Street address 12800 East 19th Ave
City Aurora
ZIP/Postal code 80045
Country USA
Platforms (1)
GPL15520 Illumina MiSeq (Homo sapiens)
Samples (61)
GSM2150075 p1 tumor
GSM2150076 p1 PBL
GSM2150077 p1 LN
BioProject PRJNA321261
SRA SRP074899

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE81313_GSM_SRR_readme.txt.gz 817 b (ftp)(http) TXT
GSE81313_RAW.tar 2.2 Mb (http)(custom) TAR (of TXT)
GSE81313_Readme.pdf 319.7 Kb (ftp)(http) PDF
Processed data provided as supplementary file
Raw data are available in SRA

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