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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jun 24, 2016 |
| Title |
Identification of an NKX3.1-G9a-UTY regulatory network that controls prostate differentiation (Mouse_Recomb_RNA-Seq) |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Analysis of transcriptome of tissue recombinants (mouse seminal vesicle epithelial [SVE] cells or prostate epithelial [PE] cells, and rat urogenital sinus [UGS] mesenchymal cells) grown under the kidney capsule in athymic nude mice for 3 months.
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| Overall design |
Total RNA obtained from tissue recombinants generated from combining engineered mouse epithelial cells (SVE or PE from 2-month-old C57Bl/6J mice) and rat UGS mesenchymal cells. Tissue recombinants were harvested and processed for RNA isolation and transcriptome analysis using the RNeasy kit (Qiagen).
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| Contributor(s) |
Dutta A, Le Magnen C, Mitrofanova A, Abate-Shen C |
| Citation(s) |
27339988 |
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| Submission date |
May 13, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Antonina Mitrofanova |
| E-mail(s) |
mitrofanova.antonina@hotmail.com
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| Organization name |
Rutgers University
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| Street address |
65 Bergen Street, Rm 923B
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| City |
Newark |
| State/province |
NJ |
| ZIP/Postal code |
07107 |
| Country |
USA |
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| Platforms (1) |
| GPL13112 |
Illumina HiSeq 2000 (Mus musculus) |
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| Samples (20)
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| GSM2152394 |
SVE + UGM, CAD104 |
| GSM2152395 |
PE + UGM, CAD105 |
| GSM2152396 |
PE + UGM, CAD106 |
| GSM2152397 |
PE + UGM, CAD107 |
| GSM2152398 |
PE + UGM, CAD108 |
| GSM2152399 |
SVE (mNKX3.1) + UGM, CAD109 |
| GSM2152400 |
SVE (mNKX3.1) + UGM, CAD110 |
| GSM2152401 |
SVE (mNKX3.1) + UGM, CAD111 |
| GSM2152402 |
SVE (mNKX3.1) + UGM, CAD112 |
| GSM2152403 |
SVE (UTY_sh) + UGM, CAD113 |
| GSM2152404 |
SVE (UTY_sh) + UGM, CAD114 |
| GSM2152405 |
SVE (UTY_sh) + UGM, CAD115 |
| GSM2152406 |
SVE (UTY_sh) + UGM, CAD116 |
| GSM2152407 |
SVE (mNKX3.1 + UTY_sh) + UGM, CAD117 |
| GSM2152408 |
SVE (mNKX3.1 + UTY_sh) + UGM, CAD118 |
| GSM2152409 |
SVE (mNKX3.1 + UTY_sh) + UGM, CAD119 |
| GSM2152410 |
SVE (mNKX3.1 + UTY_sh) + UGM, CAD120 |
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| This SubSeries is part of SuperSeries: |
| GSE81440 |
Identification of an NKX3.1-G9a-UTY regulatory network that controls prostate differentiation |
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| Relations |
| BioProject |
PRJNA321543 |
| SRA |
SRP075116 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE81432_RNAseq_mouse_recomb.txt.gz |
2.5 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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