GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE81837 Query DataSets for GSE81837
Status Public on Jan 01, 2017
Title RNASequencing of nf-yc, hy5, and nf-yc hy5 mutants during photomorphogenic growth in Arabidopsis thaliana.
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary Purpose: The purpose of this RNA Sequencing project was to investigate the transcriptional regulatory relationship between NF-YC3/4/9 and HY5
Methods: Total RNA was isolated, and then poly-A purified. 100ng of starting RNA was used to generate RNASeq libraries using the NEXTflex Illumina qRNA-Seq Library Prep Kit, and sequenced on an Illumina HiSeq2500 machine.
Results: NF-YC3/4/9 and HY5 have both shared and independent regulatory targets.
Overall design mRNA profiles of 7-day old Wild Type (WT), nf-yc triple (Q3), hy5, and nf-yc triple hy5 (Q3hy5) seedlings grown in continuous white light were generated from two biological replicates through paired end deep sequencing on an Illumina HiSeq2500 platform.
Contributor(s) Myers ZA, Kumimoto RW, Risinger JR, Holt BF
Citation(s) 27685091
Submission date May 24, 2016
Last update date May 15, 2019
Contact name Ben F Holt
Phone 4053259092
Organization name University of Oklahoma
Department Microbiology and Plant Biology
Lab Holt Lab
Street address 770 Van Vleet Oval
City Norman
State/province OK
ZIP/Postal code 73019
Country USA
Platforms (1)
GPL17639 Illumina HiSeq 2500 (Arabidopsis thaliana)
Samples (8)
GSM2176474 WT-1
GSM2176475 WT-2
GSM2176476 Q3-1
BioProject PRJNA322671
SRA SRP075658

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE81837_Table_S1.xls.gz 2.6 Mb (ftp)(http) XLS
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap