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Series GSE81904 Query DataSets for GSE81904
Status Public on Aug 25, 2016
Title Drop-Seq analysis of P17 FACS sorted retinal cells from the Tg(Chx10-EGFP/cre,-ALPP)2Clc or Vsx2-GFP transgenic line
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Vsx2-GFP mouse retinas were dissected, FACS sorted for GFP+ cells and single-cell mRNAseq libraries generated with Drop-Seq
Overall design Drop-Seq was performed on two different batches. Bipolar1-Bipolar4 are replicates from batch 1 and Bipolar5-6 are replicates from Batch 2
Contributor(s) Shekhar K
Citation(s) 27565351
Submission date May 25, 2016
Last update date May 15, 2019
Contact name Karthik Shekhar
Phone 217-979-9852
Organization name Broad Institute
Street address 415 Main St.
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (6)
GSM2177570 P17 Vsx2-GFP mouse retina 1 (Batch 1)
GSM2177571 P17 Vsx2-GFP mouse retina 2 (Batch 1)
GSM2177572 P17 Vsx2-GFP mouse retina 3 (Batch 1)
This SubSeries is part of SuperSeries:
GSE81905 Single cell RNA-sequencing of retinal bipolar cells
BioProject PRJNA323370
SRA SRP075719

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE81904_BipolarUMICounts_Cell2016.txt.gz 42.9 Mb (ftp)(http) TXT
GSE81904_RAW.tar 61.5 Gb (http)(custom) TAR (of BAM)
GSE81904_bipolar_data_Cell2016.Rdata.gz 109.4 Mb (ftp)(http) RDATA
GSE81904_class.R.gz 7.3 Kb (ftp)(http) R
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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